RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ATG5Q9H1Y0 275 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 EXO5Q9H790 373 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 FARSAQ9Y285 508 aaKnown RBP11.03□□□□□ -0.64
CLIP3-201ENST00000360535 RWDD3Q9Y3V2 267 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 A0A1B0GUH1 482 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 ANKRD20A5PA0PJZ0 165 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 CTNSO60931 367 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 PPM1BO75688 479 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 RNH1P13489 461 aaKnown RBP11.03□□□□□ -0.64
CLIP3-201ENST00000360535 RPL18Q07020 188 aaKnown RBP11.03□□□□□ -0.64
CLIP3-201ENST00000360535 BEX5Q5H9J7 111 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 DCAF12L2Q5VW00 463 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 UNQ9370/PRO34162Q6UXP9 181 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 NDUFAF7Q7L592 441 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 KDM8Q8N371 416 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 RELL2Q8NC24 303 aaPredicted RBP11.03□□□□□ -0.64
CLIP3-201ENST00000360535 HAVCR1Q96D42 359 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 MAP3K3Q99759 626 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 MICU1Q9BPX6 476 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 COMMD4Q9H0A8 199 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 SDHAF2Q9NX18 166 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 FBXL2Q9UKC9 423 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 CFAP54Q96N23 3096 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 CLDN4O14493 209 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 OR6A2O95222 327 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 TGM6O95932 706 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 IFNGR1P15260 489 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 TPMTP51580 245 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 BIKQ13323 160 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 OR10K2Q6IF99 312 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 MDGA2Q7Z553 956 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 ZBTB44Q8NCP5 570 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 DUSP19Q8WTR2 217 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 LPAR4Q99677 370 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 ZC4H2Q9NQZ6 224 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 PTTG3PQ9NZH4 202 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 NUP50Q9UKX7 468 aa11.03□□□□□ -0.64
CLIP3-201ENST00000360535 IGKV1D-42A0A075B6H8 117 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 TCRBV21S2A2A0A5A6 115 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 A6NCN8 305 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 M0QYG6 137 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 PRAF2O60831 178 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 TNFP01375 233 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 CD3DP04234 171 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 CD14P08571 375 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 SPARCP09486 303 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 POU3F4P49335 361 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 PRPS1P60891 318 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 SORDQ00796 357 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 MEP1BQ16820 701 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 C9orf50Q5SZB4 431 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 B3GNTL1Q67FW5 361 aaPredicted RBP11.02□□□□□ -0.64
CLIP3-201ENST00000360535 TMEM92Q6UXU6 159 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 ZNF227Q86WZ6 799 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 MIB2Q96AX9 1013 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 SCARF2Q96GP6 870 aaPredicted RBP11.02□□□□□ -0.64
CLIP3-201ENST00000360535 G6PC3Q9BUM1 346 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 PRDM9Q9NQV7 894 aa11.02□□□□□ -0.64
CLIP3-201ENST00000360535 NPDC1Q9NQX5 325 aaPredicted RBP11.02□□□□□ -0.64
CLIP3-201ENST00000360535 MRPS33Q9Y291 106 aaKnown RBP11.02□□□□□ -0.64
CLIP3-201ENST00000360535 DCDC2BA2VCK2 349 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 CTDSPLO15194 276 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 HCRTR2O43614 444 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 TACR3P29371 465 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 RAG2P55895 527 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 H2BFSP57053 126 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 ETFDHQ16134 617 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 SCGB2B2Q4G0G5 96 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 ARHGAP40Q5TG30 622 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 OR2G2Q8NGZ5 317 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 ZCCHC4Q9H5U6 513 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 ELOVL3Q9HB03 270 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 TAS2R5Q9NYW4 299 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 C17orf105B2RV13 164 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 MCRIP1C9JLW8 97 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 SUSD5O60279 629 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 PRAMEF2O60811 474 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 UPK3AO75631 287 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 MFSD13AQ14CX5 517 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 TUSC1Q2TAM9 212 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 PRAMEF17Q5VTA0 474 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 OR7E24Q6IFN5 339 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 LINC00114Q6XXX2 140 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 C17orf107Q6ZR85 190 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 SLC16A9Q7RTY1 509 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 CMIPQ8IY22 773 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 MUC20Q8N307 709 aaPredicted RBP11.02□□□□□ -0.65
CLIP3-201ENST00000360535 CGGBP1Q9UFW8 167 aaPredicted RBP11.02□□□□□ -0.65
CLIP3-201ENST00000360535 MOKQ9UQ07 419 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 SLCO1B1Q9Y6L6 691 aa11.02□□□□□ -0.65
CLIP3-201ENST00000360535 hCG_1807616A0A1W2PRN6 198 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 NAP1L6A6NFF2 107 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 SCDO00767 359 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 RAB40ALP0C0E4 278 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 AKT2P31751 481 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 CAPZA2P47755 286 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 OR1D4P47884 311 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 GGTLC2Q14390 218 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 TOMM34Q15785 309 aaPredicted RBP11.01□□□□□ -0.65
CLIP3-201ENST00000360535 ZNF74Q16587 644 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms