RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RAB35Q15286 201 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 CCDC36Q8IYA8 594 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 LZICQ8WZA0 190 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 FBXO17Q96EF6 278 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 SLC25A44Q96H78 314 aaPredicted RBP15.95■□□□□ 0.14
CLN3-202ENST00000355477 REG4Q9BYZ8 158 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 BARX1Q9HBU1 254 aaPredicted RBP15.95■□□□□ 0.14
CLN3-202ENST00000355477 MOV10Q9HCE1 1003 aaKnown RBP15.95■□□□□ 0.14
CLN3-202ENST00000355477 CA10Q9NS85 328 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 GLTPQ9NZD2 209 aa15.95■□□□□ 0.14
CLN3-202ENST00000355477 IGHV2OR16-5A0A0B4J2B6 119 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 H7C417 338 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 J3KTA2 159 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 FFAR1O14842 300 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 GSTA4O15217 222 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 PIP5K1CO60331 668 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 ZNF682O95780 498 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 BCL10O95999 233 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 IGF2P01344 180 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 TSPAN19P0C672 248 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 PGA4P0DJD7 388 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 PGA3P0DJD8 388 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 AQP2P41181 271 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 CHRNB3Q05901 458 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 RUNX1T1Q06455 604 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 ST3GAL3Q11203 375 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 NPRL3Q12980 569 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 LAPTM4AQ15012 233 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 MOSPD2Q8NHP6 518 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 LIPHQ8WWY8 451 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 ZNF566Q969W8 418 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 CMTM5Q96DZ9 223 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 PRRC1Q96M27 445 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 ZNF75AQ96N20 296 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 FOXB1Q99853 325 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 MAN2C1Q9NTJ4 1040 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 RHCGQ9UBD6 479 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 MED31Q9Y3C7 131 aa15.94■□□□□ 0.14
CLN3-202ENST00000355477 GMNCA6NCL1 334 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 CD79AP11912 226 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 NCK1P16333 377 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 SERPINF1P36955 418 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 NUDT6P53370 316 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 PSME3P61289 254 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 KRTAP1-1Q07627 177 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 ADIPOQQ15848 244 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 GSG1Q2KHT4 349 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 VHLLQ6RSH7 139 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 CBLL1Q75N03 491 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 CPLX4Q7Z7G2 160 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 SKA3Q8IX90 412 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 FGFBP3Q8TAT2 258 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 MS4A3Q96HJ5 214 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 ABCD2Q9UBJ2 740 aa15.93■□□□□ 0.14
CLN3-202ENST00000355477 IGHV4-30-2A0A087WSY4 118 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 LY6HO94772 140 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 SERPINA1P01009 418 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 IFNW1P05000 195 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 QDPRP09417 244 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 OR4A8P0C604 315 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 PATE4P0C8F1 98 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 ZNF14P17017 642 aaPredicted RBP15.92■□□□□ 0.14
CLN3-202ENST00000355477 PRDX6P30041 224 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 THBS4P35443 961 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 HIST3H3Q16695 136 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 PIWIL3Q7Z3Z3 882 aaKnown RBP15.92■□□□□ 0.14
CLN3-202ENST00000355477 TSEN54Q7Z6J9 526 aaKnown RBP15.92■□□□□ 0.14
CLN3-202ENST00000355477 MEX3DQ86XN8 651 aaKnown RBP15.92■□□□□ 0.14
CLN3-202ENST00000355477 RBM15BQ8NDT2 890 aaKnown RBP15.92■□□□□ 0.14
CLN3-202ENST00000355477 OR4F15Q8NGB8 312 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 ASB10Q8WXI3 467 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 HSH2DQ96JZ2 352 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 ZNF347Q96SE7 839 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 KCTD14Q9BQ13 255 aaPredicted RBP15.92■□□□□ 0.14
CLN3-202ENST00000355477 MRPL13Q9BYD1 178 aaKnown RBP15.92■□□□□ 0.14
CLN3-202ENST00000355477 INIPQ9NRY2 104 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 PMF1-BGLAPU3KQ54 211 aa15.92■□□□□ 0.14
CLN3-202ENST00000355477 A0A1W2PRG6 482 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 DHHO43323 396 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 PRSS23O95084 383 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 BMP4P12644 408 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 IFI30P13284 250 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 MAKP20794 623 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 RAB1AP62820 205 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 MYBPC1Q00872 1141 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 IFI44LQ53G44 452 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 OFCC1Q8IZS5 231 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 ZNF525Q8N782 197 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 SYT14Q8NB59 555 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 NUP37Q8NFH4 326 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 OR10H5Q8NGA6 315 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 GEMIN6Q8WXD5 167 aaKnown RBP15.91■□□□□ 0.14
CLN3-202ENST00000355477 MCHR2Q969V1 340 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 FAM162AQ96A26 154 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 BPIFA2Q96DR5 249 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 SEPHS2Q99611 448 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 SH3GL3Q99963 347 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 RHNO1Q9BSD3 238 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 FNDC11Q9BVV2 318 aa15.91■□□□□ 0.14
CLN3-202ENST00000355477 NSRP1Q9H0G5 558 aaKnown RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms