RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 DMWDQ09019 674 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 OR4C11Q6IEV9 310 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 FBXL22Q6P050 247 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 LCTLQ6UWM7 567 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 MBOAT2Q6ZWT7 520 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 OR13C9Q8NGT0 318 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 TMEM106AQ96A25 262 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 FOXE1O00358 373 aaPredicted RBP11.71□□□□□ -0.54
COL6A3-203ENST00000353578 TMEM71Q6P5X7 295 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 DHRS11Q6UWP2 260 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 FJX1Q86VR8 437 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 SLC46A1Q96NT5 459 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 PTPN18Q99952 460 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 A4GALTQ9NPC4 353 aa11.71□□□□□ -0.54
COL6A3-203ENST00000353578 SLC9A3R2Q15599 337 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 MAMDC4Q6UXC1 1216 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 CATSPERDQ86XM0 798 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 GHSRQ92847 366 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 WDR76Q9H967 626 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 TMED3Q9Y3Q3 217 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 MTX2O75431 263 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 CST3P01034 146 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-203ENST00000353578 GPR174Q9BXC1 333 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 RASL12Q9NYN1 266 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 OR4F5Q8NH21 305 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 FIBINQ8TAL6 211 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 BLNKQ8WV28 456 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 OR4F4Q96R69 305 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 DPH1Q9BZG8 443 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 OCEL1Q9H607 264 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 DNPH1O43598 174 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 GABRA3P34903 492 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 FAM3BP58499 235 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-203ENST00000353578 DPH7Q9BTV6 452 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 HSBP1O75506 76 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 CHRM4P08173 479 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 ADH4P08319 380 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 ABCD3P28288 659 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 PMS2P11Q13670 270 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 PDZD11Q5EBL8 140 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 STUMQ69YW2 141 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 ZNF551Q7Z340 670 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-203ENST00000353578 EPHA1P21709 976 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 DOC2BQ14184 412 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 RIPPLY2Q5TAB7 128 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 LEMD1Q68G75 181 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 CBARPQ8N350 705 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-203ENST00000353578 ARRDC1Q8N5I2 433 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 TRAPPC1Q9Y5R8 145 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 DAPP51397 102 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 BPIFB3P59826 476 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 RPS18P62269 152 aaKnown RBP11.7□□□□□ -0.54
COL6A3-203ENST00000353578 OR2AK2Q8NG84 335 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 ABHD6Q9BV23 337 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 SLC25A18Q9H1K4 315 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 SPTBN1Q01082 2364 aaKnown RBP11.7□□□□□ -0.54
COL6A3-203ENST00000353578 PPP1R3DO95685 299 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 UBE2G1P62253 170 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 TIGD5Q53EQ6 642 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 RPL7L1Q6DKI1 246 aaKnown RBP11.7□□□□□ -0.54
COL6A3-203ENST00000353578 PODNL1Q6PEZ8 512 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 TMEM184AQ6ZMB5 413 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 Q6ZTK2 550 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 FBXL6Q8N531 539 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 ZDHHC22Q8N966 263 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 TMEM104Q8NE00 496 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 TMED6Q8WW62 240 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 FBXW5Q969U6 566 aa11.7□□□□□ -0.54
COL6A3-203ENST00000353578 MEIKINA0A087WXM9 373 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 TGM5O43548 720 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 OR5AC1P0C628 307 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 FGF9P31371 208 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-203ENST00000353578 PNLIPRP3Q17RR3 467 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 SYS1Q8N2H4 156 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 NSUN5Q96P11 429 aaKnown RBP11.69□□□□□ -0.54
COL6A3-203ENST00000353578 ELF5Q9UKW6 265 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-203ENST00000353578 ENPP3O14638 875 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 GRB2P62993 217 aaKnown RBP11.69□□□□□ -0.54
COL6A3-203ENST00000353578 GPR18Q14330 331 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 OR4D1Q15615 310 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 EXT1Q16394 746 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 MMP21Q8N119 569 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 CSNK1A1LQ8N752 337 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 ZNRF4Q8WWF5 429 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 MANBALQ9NQG1 85 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 MEIS3P2A8K0S8 358 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 LAG3P18627 525 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 HAAOP46952 286 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 POU3F4P49335 361 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 TBPL2Q6SJ96 375 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 CLEC14AQ86T13 490 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 SDR9C7Q8NEX9 313 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 OR52B6Q8NGF0 335 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 NEURL3Q96EH8 262 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 CNIH4Q9P003 139 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 BAXQ07812 192 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 EMC4Q5J8M3 183 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 C1orf167Q5SNV9 1468 aa11.69□□□□□ -0.54
COL6A3-203ENST00000353578 ZNF354AO60765 605 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-203ENST00000353578 OR4E1P0C645 316 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms