RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 HTR3BO95264 441 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 AHSA1O95433 338 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 CBX7O95931 251 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 OR1D5P58170 312 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 PSG6Q00889 435 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 TAGLNQ01995 201 aaKnown RBP10.9□□□□□ -0.67
USP1-201ENST00000339950 CDK5R1Q15078 307 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 PRAMEF20Q5VT98 475 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 FAM198BQ6UWH4 519 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 PDZD9Q8IXQ8 264 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 BCORP1Q8N888 145 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 GIMAP5Q96F15 307 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 OR1F2PQ96R84 312 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 MESP1Q9BRJ9 268 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 CYSLTR2Q9NS75 346 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 FBXO4Q9UKT5 387 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 EMC9Q9Y3B6 208 aa10.9□□□□□ -0.67
USP1-201ENST00000339950 HEATR5AQ86XA9 2040 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 CHD9Q3L8U1 2897 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 PRAMEF2O60811 474 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 FAUP35544 74 aaKnown RBP10.89□□□□□ -0.67
USP1-201ENST00000339950 ACTA2P62736 377 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 ACTG2P63267 376 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 EXOSC2Q13868 293 aaKnown RBP10.89□□□□□ -0.67
USP1-201ENST00000339950 SMCO1Q147U7 214 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 GAB4Q2WGN9 574 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 C19orf48Q6RUI8 117 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 BRIX1Q8TDN6 353 aaKnown RBP10.89□□□□□ -0.67
USP1-201ENST00000339950 HAVCR2Q8TDQ0 301 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 C8orf44Q96CB5 159 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 SLC25A44Q96H78 314 aaPredicted RBP10.89□□□□□ -0.67
USP1-201ENST00000339950 SFXN2Q96NB2 322 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 KLHDC3Q9BQ90 382 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 NRIP3Q9NQ35 241 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 ZNF281Q9Y2X9 895 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 KANTRA0A1W2PQU2 76 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 ZNHIT1O43257 154 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 EFEMP2O95967 443 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 CBR1P16152 277 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 CREB3L2Q70SY1 520 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 ZFP82Q8N141 532 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 OR2L13Q8N349 312 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 C19orf47Q8N9M1 422 aaKnown RBP10.89□□□□□ -0.67
USP1-201ENST00000339950 OR4S1Q8NGB4 309 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 C2CD4CQ8TF44 421 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 MAFIPQ8WZ33 124 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 ST8SIA4Q92187 359 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 CMBLQ96DG6 245 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 GAS2L1Q99501 681 aaPredicted RBP10.89□□□□□ -0.67
USP1-201ENST00000339950 G6PC3Q9BUM1 346 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 ZNF350Q9GZX5 532 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 CCDC85CA6NKD9 419 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 NPIPA5E9PKD4 350 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 BHLHE40O14503 412 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 IL9P15248 144 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 FGF9P31371 208 aaPredicted RBP10.89□□□□□ -0.67
USP1-201ENST00000339950 POU3F4P49335 361 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 POU3F1Q03052 451 aaPredicted RBP10.89□□□□□ -0.67
USP1-201ENST00000339950 RPL18Q07020 188 aaKnown RBP10.89□□□□□ -0.67
USP1-201ENST00000339950 PLA2G7Q13093 441 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 GLYATL3Q5SZD4 288 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 TMEM88Q6PEY1 159 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 ZNF578Q96N58 590 aaPredicted RBP10.89□□□□□ -0.67
USP1-201ENST00000339950 MENTQ9BUN1 341 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 NIPAL2Q9H841 368 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 NPIPA1Q9UND3 350 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 NUBP2Q9Y5Y2 271 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 ANAPC1Q9H1A4 1944 aa10.89□□□□□ -0.67
USP1-201ENST00000339950 PHF3Q92576 2039 aaKnown RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 METTL21EPA6NDL7 271 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 GPR171O14626 319 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 BRINP1O60477 761 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 PEX14O75381 377 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 UBL3O95164 117 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 ATP1B1P05026 303 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 NANOS3P60323 173 aaKnown RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 EEF1A1P68104 462 aaKnown RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 FMODQ06828 376 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 SGCAQ16586 387 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 LIX1LQ8IVB5 337 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 CCDC36Q8IYA8 594 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 BAHD1Q8TBE0 780 aaPredicted RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 INTS14Q96SY0 518 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 WDR77Q9BQA1 342 aaPredicted RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 MS4A7Q9GZW8 240 aaPredicted RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 PLEKHA1Q9HB21 404 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 DUSP22Q9NRW4 184 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 C2orf42Q9NWW7 574 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 ANKRD10Q9NXR5 420 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 PRODH2Q9UF12 536 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 ACAD8Q9UKU7 415 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 CFAP54Q96N23 3096 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 TMEM235A6NFC5 223 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 P2RY10O00398 339 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 UTS2O95399 124 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 OR2T7P0C7T2 308 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 POU3F2P20265 443 aaPredicted RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 RBMS1P29558 406 aaKnown RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 RPS15P62841 145 aaKnown RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 COX15Q7KZN9 410 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms