RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ALDOCP09972 364 aaKnown RBP11.66□□□□□ -0.54
SDC3-201ENST00000336798 FAM199XQ6PEV8 388 aaPredicted RBP11.66□□□□□ -0.54
SDC3-201ENST00000336798 LAX1Q8IWV1 398 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 LILRA3Q8N6C8 439 aaPredicted RBP11.66□□□□□ -0.54
SDC3-201ENST00000336798 OR13H1Q8NG92 308 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 SLC38A5Q8WUX1 472 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 ADAMTS14Q8WXS8 1223 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 SEMA4CQ9C0C4 833 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 ZFP92A6NM28 416 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 XRCC3O43542 346 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 DCAF7P61962 342 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 GABREP78334 506 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 RPL22L1Q6P5R6 122 aaKnown RBP11.66□□□□□ -0.54
SDC3-201ENST00000336798 ZNF740Q8NDX6 193 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 PFN4Q8NHR9 129 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 GHSRQ92847 366 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 C20orf24Q9BUV8 137 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 AGPAT4Q9NRZ5 378 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 BOLA1Q9Y3E2 137 aa11.66□□□□□ -0.54
SDC3-201ENST00000336798 TCHHQ07283 1943 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 NPY4RP50391 375 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 TRA2BP62995 288 aaKnown RBP11.65□□□□□ -0.54
SDC3-201ENST00000336798 MRPS21P82921 87 aaKnown RBP11.65□□□□□ -0.54
SDC3-201ENST00000336798 ZNF511Q8NB15 262 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 ARSGQ96EG1 525 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 EMC6Q9BV81 110 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 ARV1Q9H2C2 271 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 OCEL1Q9H607 264 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 DEGS1O15121 323 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 S100A7P31151 101 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 ZNF91Q05481 1191 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 DUSP2Q05923 314 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 TMEM41BQ5BJD5 291 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 FRMPD2BQ6IN97 320 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 DCXRQ7Z4W1 244 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 TMEM106AQ96A25 262 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 NAA50Q9GZZ1 169 aaKnown RBP11.65□□□□□ -0.54
SDC3-201ENST00000336798 TREX1Q9NSU2 369 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 SPHK1Q9NYA1 384 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 LRRC30A6NM36 301 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 KCNK2O95069 426 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 SLC1A3P43003 542 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 RACK1P63244 317 aaKnown RBP11.65□□□□□ -0.54
SDC3-201ENST00000336798 SLC7A9P82251 487 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 MYBPHQ13203 477 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 TMEM178AQ8NBL3 297 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 ZBTB44Q8NCP5 570 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 PLPP5Q8NEB5 264 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 OR51H1Q8NH63 302 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 RPL3LQ92901 407 aaKnown RBP11.65□□□□□ -0.54
SDC3-201ENST00000336798 LCORQ96JN0 433 aaPredicted RBP11.65□□□□□ -0.54
SDC3-201ENST00000336798 TRIB1Q96RU8 372 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 GPR173Q9NS66 373 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 IGKV6D-21A0A0A0MT36 114 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 SHISA7A6NL88 538 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 ITGAMP11215 1152 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 AADACP22760 399 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 IVDP26440 423 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 ACSM1Q08AH1 577 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 MLF2Q15773 248 aaPredicted RBP11.65□□□□□ -0.54
SDC3-201ENST00000336798 MPPED2Q15777 294 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 ADIRFQ15847 76 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 DUSP6Q16828 381 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 CYS1Q717R9 158 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 SVBPQ8N300 66 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 CHTF18Q8WVB6 975 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 ABHD6Q9BV23 337 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 HES7Q9BYE0 225 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 PPP1R3CQ9UQK1 317 aa11.65□□□□□ -0.54
SDC3-201ENST00000336798 M0R1B8 84 aa11.65□□□□□ -0.55
SDC3-201ENST00000336798 HEXAP06865 529 aa11.65□□□□□ -0.55
SDC3-201ENST00000336798 C17orf67Q0P5P2 114 aa11.65□□□□□ -0.55
SDC3-201ENST00000336798 OR10K1Q8NGX5 313 aa11.65□□□□□ -0.55
SDC3-201ENST00000336798 OR2T11Q8NH01 316 aa11.65□□□□□ -0.55
SDC3-201ENST00000336798 GOT1L1Q8NHS2 421 aaPredicted RBP11.65□□□□□ -0.55
SDC3-201ENST00000336798 RBPMSQ93062 196 aaKnown RBP11.65□□□□□ -0.55
SDC3-201ENST00000336798 CGGBP1Q9UFW8 167 aaPredicted RBP11.65□□□□□ -0.55
SDC3-201ENST00000336798 EMCNQ9ULC0 261 aa11.65□□□□□ -0.55
SDC3-201ENST00000336798 TRAV36DV7A0A075B6V5 113 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 KLRC4-KLRK1H3BQV0 150 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 WNT11O96014 354 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 GLI4P10075 376 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 TACR1P25103 407 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 RFC3P40938 356 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 CYB561P49447 251 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 FIZ1Q96SL8 496 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 A3GALT2U3KPV4 340 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 BTBD17A6NE02 478 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 OR6C76A6NM76 312 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 PRKNO60260 465 aaPredicted RBP11.64□□□□□ -0.55
SDC3-201ENST00000336798 GDNFP39905 211 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 GLYR1Q49A26 553 aaPredicted RBP11.64□□□□□ -0.55
SDC3-201ENST00000336798 PINX1Q96BK5 328 aaKnown RBP11.64□□□□□ -0.55
SDC3-201ENST00000336798 GORASP2Q9H8Y8 452 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 WDR76Q9H967 626 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 URGCP-MRPS24S4R325 110 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 TMEM212A6NML5 194 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 SPINT2O43291 252 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 F11P03951 625 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 DAPP51397 102 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms