RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ZNF837Q96EG3 531 aaPredicted RBP13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 PIK3IP1Q96FE7 263 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 MUS81Q96NY9 551 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 TSPAN32Q96QS1 320 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 GLTPQ9NZD2 209 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 STX18Q9P2W9 335 aaKnown RBP13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 IL20RAQ9UHF4 553 aa13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 ZNF346Q9UL40 294 aaKnown RBP13.95□□□□□ -0.18
CCDC28A-201ENST00000332797 A0A096LPE4 126 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 A0A1W2PPZ6 126 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 DEFB108AA8MXU0 73 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 SIAH2O43255 324 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 CTAG2O75638 210 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 SEC14L2O76054 403 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 ACADSP16219 412 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 ACVR1BP36896 505 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 GSSP48637 474 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 IST1P53990 364 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 SMARCD3Q6STE5 483 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 THSD4Q6ZMP0 1018 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 C17orf78Q8N4C9 275 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 AQP11Q8NBQ7 271 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 SLC17A5Q9NRA2 495 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 RASSF1Q9NS23 344 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 POFUT2Q9Y2G5 429 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 ADAM18Q9Y3Q7 739 aa13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 HRNRQ86YZ3 2850 aaPredicted RBP13.94□□□□□ -0.18
CCDC28A-201ENST00000332797 ZNF99A8MXY4 864 aaPredicted RBP13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 E2F6O75461 281 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 TRMUO75648 421 aaKnown RBP13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 TIPRLO75663 272 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 GOSR1O95249 250 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 GASTP01350 101 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 HRGP04196 525 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 CD14P08571 375 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 FXYD6P3P58550 94 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 MYBPC1Q00872 1141 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 TSPAN31Q12999 210 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 GK3PQ14409 553 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 TBRG1Q3YBR2 411 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 BEX5Q5H9J7 111 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 FAM205BPQ63HN1 556 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 ZNF770Q6IQ21 691 aaPredicted RBP13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 ANKRD16Q6P6B7 361 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 KLHL24Q6TFL4 600 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 OR10G2Q8NGC3 310 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 HDAC2Q92769 488 aaKnown RBP13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 MRPL13Q9BYD1 178 aaKnown RBP13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 CLEC4MQ9H2X3 399 aaPredicted RBP13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 OR52D1Q9H346 318 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 NGBQ9NPG2 151 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 GRHPRQ9UBQ7 328 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 DNAJB9Q9UBS3 223 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 SLC25A15Q9Y619 301 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 TACC2O95359 2948 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 APCP25054 2843 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 FAM221AA4D161 298 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 A6NIZ1 184 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 CYSRT1A8MQ03 144 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 CENPBD1B2RD01 187 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 QDPRP09417 244 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 KRTAP10-9P60411 292 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 RAP1BP61224 184 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 RAP1AP62834 184 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 CD47Q08722 323 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 LRFN4Q6PJG9 635 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 SEZ6L2Q6UXD5 910 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 TMEM179BQ7Z7N9 219 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 WDR31Q8NA23 367 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 ZNF519Q8TB69 540 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 GIPC3Q8TF64 312 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 BCL2L2Q92843 193 aaPredicted RBP13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 GTPBP3Q969Y2 492 aaKnown RBP13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 PLPPR2Q96GM1 343 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 ZNF570Q96NI8 536 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 GPX7Q96SL4 187 aaPredicted RBP13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 AMDHD2Q9Y303 409 aa13.93□□□□□ -0.18
CCDC28A-201ENST00000332797 ITPR2Q14571 2701 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 DEAF1O75398 565 aaPredicted RBP13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 B4GALT1P15291 398 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 SLC6A6P31641 620 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 ZNF83P51522 516 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 UBE2NP61088 152 aaKnown RBP13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 TUBA1BP68363 451 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 TUBA4AP68366 448 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 KPNB1Q14974 876 aaKnown RBP13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 HIST3H3Q16695 136 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 RFX4Q33E94 735 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 ZNF813Q6ZN06 617 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 DPY19L2P2Q6ZN68 376 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 ZNF620Q6ZNG0 422 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 TUBA1AQ71U36 451 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 SSX8Q7RTT4 187 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 YTHDF3Q7Z739 585 aaKnown RBP13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 ARIH2OSQ8N7S6 290 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 MCHR2Q969V1 340 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 RASD2Q96D21 266 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 SAMD8Q96LT4 415 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 Q96M85 177 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms