RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 NT5CQ8TCD5 201 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 SLC41A2Q96JW4 573 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 CCNL2Q96S94 520 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-201ENST00000323668 C6orf106Q9H6K1 298 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-201ENST00000323668 PPP1R3EQ9H7J1 279 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 TAS2R5Q9NYW4 299 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 SIP14410 1827 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 RLFQ13129 1914 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 TGM6O95932 706 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 KNG1P01042 644 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 IGHA1P01876 353 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 SDHAP31040 664 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 HTRA3P83110 453 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 MLF2Q15773 248 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-201ENST00000323668 TCTN1Q2MV58 587 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 SPIN3Q5JUX0 258 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 FRMD1Q8N878 549 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 ZSCAN1Q8NBB4 408 aa13.5□□□□□ -0.25
TCOF1-201ENST00000323668 SNIP1Q8TAD8 396 aaKnown RBP13.5□□□□□ -0.25
TCOF1-201ENST00000323668 TRPM6Q9BX84 2022 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 IFITM2Q01629 132 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 POU3F1Q03052 451 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-201ENST00000323668 TNK1Q13470 666 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 CD300LFQ8TDQ1 290 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 MIB2Q96AX9 1013 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 DCBLD2Q96PD2 775 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 MAP3K3Q99759 626 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 CDCP1Q9H5V8 836 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 NEUROG3Q9Y4Z2 214 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 DSPPQ9NZW4 1301 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 ASCC3Q8N3C0 2202 aaKnown RBP13.49□□□□□ -0.25
TCOF1-201ENST00000323668 SCO1O75880 301 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 GAAP10253 952 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 M6PRP20645 277 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 HSD17B7P56937 341 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 ACSM1Q08AH1 577 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 ZIC1Q15915 447 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 RASGRP3Q8IV61 690 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 WDR77Q9BQA1 342 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-201ENST00000323668 SLC19A3Q9BZV2 496 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 SCN10AQ9Y5Y9 1956 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 OR5K3A6NET4 321 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 SUSD5O60279 629 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 RPL35P42766 123 aaKnown RBP13.49□□□□□ -0.25
TCOF1-201ENST00000323668 COX15Q7KZN9 410 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 NLRC3Q7RTR2 1065 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 ABHD12BQ7Z5M8 362 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-201ENST00000323668 TRAPPC6BQ86SZ2 158 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 CA13Q8N1Q1 262 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 PXT1Q8NFP0 134 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 EMC9Q9Y3B6 208 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 MYO16Q9Y6X6 1858 aa13.49□□□□□ -0.25
TCOF1-201ENST00000323668 C9J4A7 227 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 TMEM127O75204 238 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 NTN1O95631 604 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 IL32P24001 234 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 EMDP50402 254 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 ZP2Q05996 745 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 CLLU1Q5K131 121 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 PAQR8Q8TEZ7 354 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 RGCCQ9H4X1 137 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 CUTCQ9NTM9 273 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 FBXL4Q9UKA2 621 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 WDR81Q562E7 1941 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 ZNF850A8MQ14 1090 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 NPIPA2E9PIF3 369 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 NPIPA3F8WFD2 350 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 ZNF28P17035 718 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 RAB5BP61020 215 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 ST3GAL2Q16842 350 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 FAM69BQ5VUD6 431 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 Q6ZTK2 550 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 ZNF565Q8N9K5 539 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 OR13H1Q8NG92 308 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 STK35Q8TDR2 534 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 VRK1Q99986 396 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-201ENST00000323668 ST6GALNAC5Q9BVH7 336 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 ADGRL4Q9HBW9 690 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 RALGAPA2Q2PPJ7 1873 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 A0A0B4J2E0 115 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 A0A1B0GX12 115 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 WNT1P04628 370 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 KLK3P07288 261 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-201ENST00000323668 RPS27P42677 84 aaKnown RBP13.48□□□□□ -0.25
TCOF1-201ENST00000323668 CRYBA2P53672 197 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 MRM1Q6IN84 353 aaKnown RBP13.48□□□□□ -0.25
TCOF1-201ENST00000323668 IQCF2Q8IXL9 164 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 OR51T1Q8NGJ9 327 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 OR14A16Q8NHC5 309 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 MAN2C1Q9NTJ4 1040 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 MEIKINA0A087WXM9 373 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 ZNF616Q08AN1 781 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 TSEN54Q7Z6J9 526 aaKnown RBP13.48□□□□□ -0.25
TCOF1-201ENST00000323668 RSC1A1Q92681 617 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 CMTM3Q96MX0 182 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 ZNF304Q9HCX3 659 aa13.48□□□□□ -0.25
TCOF1-201ENST00000323668 A0A1W2PS29 197 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 BDKRB2P30411 391 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 ZNF84P51523 738 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 POLR2HP52434 150 aaKnown RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms