RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 RNF6Q9Y252 685 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 GMPPBQ9Y5P6 360 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 HSPE1-MOB4S4R3N1 261 aa16.11■□□□□ 0.17
HMGA1-201ENST00000311487 TEX13CA0A0J9YWL9 993 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 A0A1W2PNV4 684 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 A0A1W2PRG6 482 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 SLC1A7O00341 560 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 FZD7O75084 574 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 SLC2A10O95528 541 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 GABARAPL2P60520 117 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 ESRRGP62508 458 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 NPRL3Q12980 569 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 CDK5R2Q13319 367 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 NHLRC1Q6VVB1 395 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 FAM214BQ7L5A3 538 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 GPR141Q7Z602 305 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 LUZP2Q86TE4 346 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 CNIH3Q8TBE1 160 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 OPN3Q9H1Y3 402 aaPredicted RBP16.1■□□□□ 0.17
HMGA1-201ENST00000311487 PRSS50Q9UI38 385 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 POFUT2Q9Y2G5 429 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 NOX1Q9Y5S8 564 aa16.1■□□□□ 0.17
HMGA1-201ENST00000311487 AHCYL1O43865 530 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 ZG16O60844 167 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 MRPL33O75394 65 aaKnown RBP16.09■□□□□ 0.17
HMGA1-201ENST00000311487 VAMP5O95183 116 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 BCL10O95999 233 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 HOXD4P09016 255 aaPredicted RBP16.09■□□□□ 0.17
HMGA1-201ENST00000311487 NOS3P29474 1203 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 CEACAM8P31997 349 aaPredicted RBP16.09■□□□□ 0.17
HMGA1-201ENST00000311487 ACVR1BP36896 505 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 ZP4Q12836 540 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 GINS1Q14691 196 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 C9orf135Q5VTT2 229 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 ACSM5Q6NUN0 579 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 CD300LDQ6UXZ3 194 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 AAED1Q7RTV5 226 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 ADPRHL1Q8NDY3 354 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 TEX47Q8TBZ9 253 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 ZNF566Q969W8 418 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 STARD4Q96DR4 205 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 SF3B5Q9BWJ5 86 aaKnown RBP16.09■□□□□ 0.17
HMGA1-201ENST00000311487 BCO1Q9HAY6 547 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 PTTG2Q9NZH5 202 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 GRHPRQ9UBQ7 328 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 RSL24D1Q9UHA3 163 aaKnown RBP16.09■□□□□ 0.17
HMGA1-201ENST00000311487 BLOC1S6Q9UL45 172 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 HTR3EA5X5Y0 456 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 SS18L1O75177 396 aaPredicted RBP16.09■□□□□ 0.17
HMGA1-201ENST00000311487 PLA2G2AP14555 144 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 SLC16A1P53985 500 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 COX10Q12887 443 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 PTGES3Q15185 160 aaKnown RBP16.09■□□□□ 0.17
HMGA1-201ENST00000311487 PHYHD1Q5SRE7 291 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 OR2A2Q6IF42 318 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 UBE2J2Q8N2K1 259 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 OR52L1Q8NGH7 329 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 OR4K13Q8NH42 304 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 APOL4Q9BPW4 351 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 EMC3Q9P0I2 261 aa16.09■□□□□ 0.17
HMGA1-201ENST00000311487 IGKV3D-15A0A087WSY6 115 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 EEF1E1-BLOC1S5C9J1V9 151 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 M0R3G1 203 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 BHLHE40O14503 412 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 ARHGEF9O43307 516 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 EEF1E1O43324 174 aaKnown RBP16.08■□□□□ 0.16
HMGA1-201ENST00000311487 CD14P08571 375 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 HTR1AP08908 422 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 CCDC159P0C7I6 412 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 HIST1H1CP16403 213 aaKnown RBP16.08■□□□□ 0.16
HMGA1-201ENST00000311487 SLC6A6P31641 620 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 CRISP1P54107 249 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 GUSBP1Q15486 140 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 DPY19L2P2Q6ZN68 376 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 ZNF100Q8IYN0 542 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 CYB561A3Q8NBI2 242 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 HTRA1Q92743 480 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 TXNIPQ9H3M7 391 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 FN3KQ9H479 309 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 RERGLQ9H628 205 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 NRIP3Q9NQ35 241 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 GPR52Q9Y2T5 361 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 EMC9Q9Y3B6 208 aa16.08■□□□□ 0.16
HMGA1-201ENST00000311487 ZNF726A6NNF4 738 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 UPK3AO75631 287 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 RNF224P0DH78 156 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 JUNBP17275 347 aaPredicted RBP16.07■□□□□ 0.16
HMGA1-201ENST00000311487 CTSSP25774 331 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 FOXG1P55316 489 aaPredicted RBP16.07■□□□□ 0.16
HMGA1-201ENST00000311487 RPL27P61353 136 aaKnown RBP16.07■□□□□ 0.16
HMGA1-201ENST00000311487 RAB39AQ14964 217 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 NEDD8Q15843 81 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 C4orf17Q53FE4 359 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 MESTQ5EB52 335 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 OTPQ5XKR4 325 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 FAM122BQ7Z309 247 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 ZNF610Q8N9Z0 462 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 BPIFB6Q8NFQ5 453 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 ASB10Q8WXI3 467 aa16.07■□□□□ 0.16
HMGA1-201ENST00000311487 OTULINQ96BN8 352 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms