RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 OPA3Q9H6K4 179 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 MRPL22Q9NWU5 206 aaKnown RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 NME2P1O60361 137 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 PRAMEF4O60810 478 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 MAOBP27338 520 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 TMEM182Q6ZP80 229 aaPredicted RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 ESPNLQ6ZVH7 1005 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 OR1J2Q8NGS2 313 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 OR52N1Q8NH53 320 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 CORO2AQ92828 525 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 DVL3Q92997 716 aaPredicted RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 DDOQ99489 341 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 CABLES2Q9BTV7 478 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 NDRG3Q9UGV2 375 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 PHRF1Q9P1Y6 1649 aaKnown RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 NPY4RP50391 375 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 KCNJ10P78508 379 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 CLEC9AQ6UXN8 241 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 SORBS1Q9BX66 1292 aaKnown RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 MARCH8Q5T0T0 291 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 PNPLA1Q8N8W4 532 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 EMCNQ9ULC0 261 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 SRPK3Q9UPE1 567 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 SNED1Q8TER0 1413 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 TUBAL3A6NHL2 446 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 MAN2B1O00754 1011 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 GSTP1P09211 210 aaKnown RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 ALDOCP09972 364 aaKnown RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 EXOSC7Q15024 291 aaKnown RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 LTC4SQ16873 150 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 TCTE3Q8IZS6 198 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 STT3BQ8TCJ2 826 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 SRRQ9GZT4 340 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 B3GAT1Q9P2W7 334 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF217O75362 1048 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 C1orf105O95561 183 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 SUB1P53999 127 aaKnown RBP eCLIP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 ELLP55199 621 aaPredicted RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 WWTR1Q9GZV5 400 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 SLCO3A1Q9UIG8 710 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 GPR55Q9Y2T6 319 aaPredicted RBP12.85□□□□□ -0.35
CSPG4-201ENST00000308508 IFT172Q9UG01 1749 aa12.85□□□□□ -0.35
CSPG4-201ENST00000308508 ADRA2CP18825 462 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 OR1D4P47884 311 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 ARG2P78540 354 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 PHLDA2Q53GA4 152 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 SYT9Q86SS6 491 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF355PQ9NSJ1 428 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 ADAM29Q9UKF5 820 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 OR2A25A4D2G3 310 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 HSD17B6O14756 317 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 SEMA4FO95754 770 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 DPY19L2P2Q6ZN68 376 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 OR4F5Q8NH21 305 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 APH1AQ96BI3 265 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 OR4F4Q96R69 305 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 FAM234AQ9H0X4 552 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 FUCA1P04066 466 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 SNRPGP62308 76 aaKnown RBP12.84□□□□□ -0.35
CSPG4-201ENST00000308508 SLC35D2Q76EJ3 337 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 ADGRG3Q86Y34 549 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 OR2L13Q8N349 312 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 TREX1Q9NSU2 369 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 HSF1Q00613 529 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF789Q5FWF6 425 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 H2BFWTQ7Z2G1 175 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 OR10J5Q8NHC4 309 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 GPR78Q96P69 363 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 CPPED1Q9BRF8 314 aaPredicted RBP12.84□□□□□ -0.35
CSPG4-201ENST00000308508 IFT22Q9H7X7 185 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 ST8SIA3O43173 380 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 USF1P22415 310 aaPredicted RBP12.84□□□□□ -0.35
CSPG4-201ENST00000308508 VASPP50552 380 aaPredicted RBP12.84□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF140P52738 457 aaPredicted RBP12.84□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF542PQ5EBM4 170 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 SLC35D3Q5M8T2 416 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 OVCH1Q7RTY7 1134 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 MISPQ8IVT2 679 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 RNF175Q8N4F7 328 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 SLC38A5Q8WUX1 472 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 SCPEP1Q9HB40 452 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 TAS2R5Q9NYW4 299 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 SH3BGRL2Q9UJC5 107 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 NPIPB15A6NHN6 443 aaPredicted RBP12.84□□□□□ -0.35
CSPG4-201ENST00000308508 MRPL33O75394 65 aaKnown RBP12.84□□□□□ -0.35
CSPG4-201ENST00000308508 ADH4P08319 380 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 DSC1Q08554 894 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 SYPL1Q16563 259 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 HAGHQ16775 308 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 DPPA4Q7L190 304 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 OR51S1Q8NGJ8 323 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 GAREM1Q9H706 876 aa12.84□□□□□ -0.35
CSPG4-201ENST00000308508 XKRY2A2RUG3 117 aa12.83□□□□□ -0.35
CSPG4-201ENST00000308508 GDF1P27539 372 aa12.83□□□□□ -0.35
CSPG4-201ENST00000308508 P2RX3P56373 397 aa12.83□□□□□ -0.35
CSPG4-201ENST00000308508 GGTA1PQ4G0N0 100 aa12.83□□□□□ -0.35
CSPG4-201ENST00000308508 MON2Q7Z3U7 1717 aa12.83□□□□□ -0.35
CSPG4-201ENST00000308508 LMNTD1Q8N9Z9 388 aa12.83□□□□□ -0.35
CSPG4-201ENST00000308508 SPINT2O43291 252 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 TIMM8AO60220 97 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms