RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 OR52A5Q9H2C5 316 aa17.76■□□□□ 0.43
USP48-201ENST00000308271 LINC00862A6NCI5 91 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 PEX12O00623 359 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 LILRB3O75022 631 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 SLC35E2P0CK97 266 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 PRR22Q8IZ63 422 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 TSPAN10Q9H1Z9 355 aaPredicted RBP17.75■□□□□ 0.43
USP48-201ENST00000308271 ZMAT3Q9HA38 289 aaKnown RBP17.75■□□□□ 0.43
USP48-201ENST00000308271 NIT2Q9NQR4 276 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 K7ESM1 405 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 SEC14L5O43304 696 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 ZNF43P17038 809 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 UBE2IP63279 158 aaKnown RBP17.75■□□□□ 0.43
USP48-201ENST00000308271 DPTQ07507 201 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 C3orf33Q6P1S2 294 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 MCATQ8IVS2 390 aaKnown RBP17.75■□□□□ 0.43
USP48-201ENST00000308271 OR1M1Q8NGA1 313 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 OR9A4Q8NGU2 314 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 RAB3CQ96E17 227 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 DERL3Q96Q80 235 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 C12orf57Q99622 126 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 NICN1Q9BSH3 213 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 SFXN1Q9H9B4 322 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 CPNE7Q9UBL6 633 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 KCND3Q9UK17 655 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 TTC3P53804 2025 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 SLC34A2O95436 690 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 UBE2MP61081 183 aaKnown RBP17.75■□□□□ 0.43
USP48-201ENST00000308271 SMUG1Q53HV7 270 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 ZNF761Q86XN6 746 aaPredicted RBP17.75■□□□□ 0.43
USP48-201ENST00000308271 C1orf123Q9NWV4 160 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 APOBEC3BQ9UH17 382 aaKnown RBP17.75■□□□□ 0.43
USP48-201ENST00000308271 GMEB2Q9UKD1 530 aa17.75■□□□□ 0.43
USP48-201ENST00000308271 NINQ8N4C6 2090 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 CCSO14618 274 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 PLPP2O43688 288 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 ATF1P18846 271 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 TACR3P29371 465 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 IDH3GP51553 393 aaPredicted RBP17.74■□□□□ 0.43
USP48-201ENST00000308271 P2RX1P51575 399 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 AKR1C2P52895 323 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 AKR1C1Q04828 323 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 ZNF542PQ5EBM4 170 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 NAXDQ8IW45 347 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 ZNF595Q8IYB9 648 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 TMEFF1Q8IYR6 380 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 NPRL2Q8WTW4 380 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 C12orf10Q9HB07 376 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 TM7SF3Q9NS93 570 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 GFOD1Q9NXC2 390 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 KPTNQ9Y664 436 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 KIR2DS5A0A0G2JLQ3 304 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 A0A0G2JNG1 304 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 KIR2DS3K7RE56 304 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 RRASP10301 218 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 KIR2DS5Q14953 304 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 TRMT12Q53H54 448 aaKnown RBP17.74■□□□□ 0.43
USP48-201ENST00000308271 FAM160A2Q8N612 972 aaPredicted RBP17.74■□□□□ 0.43
USP48-201ENST00000308271 KCNG3Q8TAE7 436 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 THAP3Q8WTV1 239 aaPredicted RBP17.74■□□□□ 0.43
USP48-201ENST00000308271 ARHGDIGQ99819 225 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 CRB3Q9BUF7 120 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 AQP8O94778 261 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 ACSM1Q08AH1 577 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 SLC22A24Q8N4F4 322 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 OR5L2Q8NGL0 311 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 OR13C9Q8NGT0 318 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 TMEM59Q9BXS4 323 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 ULBP3Q9BZM4 244 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 EXOGQ9Y2C4 368 aaKnown RBP17.74■□□□□ 0.43
USP48-201ENST00000308271 MAGEB4O15481 346 aaPredicted RBP17.74■□□□□ 0.43
USP48-201ENST00000308271 TRHRP34981 398 aaPredicted RBP17.74■□□□□ 0.43
USP48-201ENST00000308271 ARRB1P49407 418 aaPredicted RBP17.74■□□□□ 0.43
USP48-201ENST00000308271 CAMK2BQ13554 666 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 AADACL4Q5VUY2 407 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 ZNF695Q8IW36 515 aa17.74■□□□□ 0.43
USP48-201ENST00000308271 H3BUI4 141 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 MAOBP27338 520 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 FCRL6Q6DN72 434 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 STAC2Q6ZMT1 411 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 DCBLD2Q96PD2 775 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 HDAC8Q9BY41 377 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 REV1Q9UBZ9 1251 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 S100A8P05109 93 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 Q6ZNB5 142 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 C14orf79Q96F83 325 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 WNT1P04628 370 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 OR4E1P0C645 316 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 MPEG1Q2M385 716 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 PAN3Q58A45 887 aaKnown RBP17.73■□□□□ 0.43
USP48-201ENST00000308271 ELFN2Q5R3F8 820 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 SPICQ8N5J4 248 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 CNRIP1Q96F85 164 aaPredicted RBP17.73■□□□□ 0.43
USP48-201ENST00000308271 DAPP1Q9UN19 280 aa17.73■□□□□ 0.43
USP48-201ENST00000308271 SLC33A1O00400 549 aaPredicted RBP17.72■□□□□ 0.43
USP48-201ENST00000308271 FOSL2P15408 326 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 RABIFP47224 123 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 SOHLH1Q5JUK2 328 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 SLC22A25Q6T423 547 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 ST7LQ8TDW4 575 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms