RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GPLD1P80108 840 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 WBP2NLQ6ICG8 309 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 WDR73Q6P4I2 378 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OR5D16Q8NGK9 328 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 HMGB4Q8WW32 186 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 DCUN1D4Q92564 292 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 FOXJ1Q92949 421 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MUCL1Q96DR8 90 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MOCOSQ96EN8 888 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 DPH3Q96FX2 82 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 PWWP2AQ96N64 755 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SLC17A9Q9BYT1 436 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 BARX1Q9HBU1 254 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SPATA6Q9NWH7 488 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 GAR1Q9NY12 217 aaKnown RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SPANXCQ9NY87 97 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ELF5Q9UKW6 265 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SLC7A7Q9UM01 511 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 A0A087WV62 115 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SERPINE3A8MV23 424 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 EIF4E2O60573 245 aaKnown RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 CA11O75493 328 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 CDC123O75794 336 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SEMG1P04279 462 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OR10J4P0C629 311 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ETV5P41161 510 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ATP5IP56385 69 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 DHODHQ02127 395 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 ITPRIPL2Q3MIP1 535 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 SFRP5Q5T4F7 317 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 NETO2Q8NC67 525 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OR4D10Q8NGI6 311 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 OR11L1Q8NGX0 322 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 PHOSPHO1Q8TCT1 267 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MRPS24Q96EL2 167 aaKnown RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM19Q96HH6 336 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 KIRREL1Q96J84 757 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 BPIFA1Q9NP55 256 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 TMPRSS4Q9NRS4 437 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 KIAA1456Q9P272 454 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 MMACHCQ9Y4U1 282 aa4.87□□□□□ -1.63
SCN1A-201ENST00000303395 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-201ENST00000303395 TRBV5-4A0A0C4DH59 114 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 LNP1A1A4G5 178 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SLC38A8A6NNN8 435 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 G3V3Q6 166 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 CFHP08603 1231 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 GPR4P46093 362 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ATXN7L3Q14CW9 347 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SGCAQ16586 387 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF805Q5CZA5 627 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ARSIQ5FYB1 569 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 DLEU7Q6UYE1 221 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SNX29P2Q8IUI4 249 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ENTHD1Q8IYW4 607 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 CPEB3Q8NE35 698 aaKnown RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 RPUSD4Q96CM3 377 aaKnown RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 INPP5KQ9BT40 448 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 C20orf85Q9H1P6 137 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SLC2A4RGQ9NR83 387 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ERVK13-1Q9NX77 482 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 STEAP1Q9UHE8 339 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 KCND3Q9UK17 655 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 FOXJ3Q9UPW0 622 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 KDM4FA0A1W2PPD8 638 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 FZD7O75084 574 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 MT-CYBP00156 380 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 POU2F2P09086 479 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 EPXP11678 715 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 CST5P28325 142 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 RABIFP47224 123 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 MEOX2P50222 304 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 IHHQ14623 411 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 MEP1BQ16820 701 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 FOXB2Q5VYV0 432 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 CES4AQ5XG92 561 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 HEPHL1Q6MZM0 1159 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 GLDNQ6ZMI3 551 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 TMPRSS11FQ6ZWK6 438 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 BAGE3Q86Y29 109 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 BAGE2Q86Y30 109 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SLC22A24Q8N4F4 322 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SMOQ99835 787 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM204Q9BSN7 226 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 GPR62Q9BZJ7 368 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 RAB18Q9NP72 206 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SRPK3Q9UPE1 567 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 LOC102725191A0A1B0GVB3 256 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SLC25A4P12235 298 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 GABRA4P48169 554 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 TAS2R60P59551 318 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 HES1Q14469 280 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 IRF3Q14653 427 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 CLEC12AQ5QGZ9 265 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 C12orf73Q69YU5 71 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 NLRC3Q7RTR2 1065 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 LIMS2Q7Z4I7 341 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 PRR18Q8N4B5 295 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 OR6C4Q8NGE1 309 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms