RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 WDR93Q6P2C0 686 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 MREGQ8N565 214 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 BHLHE22Q8NFJ8 381 aaPredicted RBP12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 NANPQ8TBE9 248 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 WDR55Q9H6Y2 383 aaPredicted RBP12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 TMEM27Q9HBJ8 222 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 SDR39U1Q9NRG7 319 aaPredicted RBP12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 THAP1Q9NVV9 213 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 MED29Q9NX70 200 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 ZNF224Q9NZL3 707 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 TAAR3PQ9P1P4 343 aa12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 MYEF2Q9P2K5 600 aaKnown RBP12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 TESQ9UGI8 421 aaKnown RBP12.64□□□□□ -0.39
CCDC88B-201ENST00000301897 LOC105371242A0A075B767 164 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 PRORSD1PA6NEY8 169 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 C17orf100A8MU93 164 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 CLIC1O00299 241 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 RGS9O75916 674 aaPredicted RBP12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 FARS2O95363 451 aaKnown RBP12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 MT-ATP6P00846 226 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 BGLAPP02818 100 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 OR8G3PP0DMU2 310 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 ZNF250P15622 560 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 CBLP22681 906 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 HTR2AP28223 471 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 POLR2JP52435 117 aaKnown RBP12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 AQP5P55064 265 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 TNFAIP8L3Q5GJ75 292 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 FAM209AQ5JX71 171 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 TMEM53Q6P2H8 277 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 NHLRC1Q6VVB1 395 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 C1orf229Q6ZS94 237 aaPredicted RBP12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 TREML1Q86YW5 311 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 BPIFB2Q8N4F0 458 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 OR1J2Q8NGS2 313 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 SYNPRQ8TBG9 265 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 RNF217Q8TC41 542 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 C11orf40Q8WZ69 217 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 VPS33AQ96AX1 596 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 TIMD4Q96H15 378 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 TMEM43Q9BTV4 400 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 LRMDAQ9H2I8 198 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 NTN4Q9HB63 628 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 KCNK9Q9NPC2 374 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 SLC13A4Q9UKG4 626 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 FZR1Q9UM11 496 aa12.63□□□□□ -0.39
CCDC88B-201ENST00000301897 IGLV3-9A0A075B6K5 115 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 IGHV1-69-2A0A0G2JMI3 117 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 CLDN25C9JDP6 229 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 PLPP3O14495 311 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 PPIBP23284 216 aaKnown RBP12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 AHCYP23526 432 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 FPR2P25090 351 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 CRYBB2P43320 205 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 RAD52P43351 418 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 RGS8P57771 180 aaPredicted RBP12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 CCL8P80075 99 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 GTDC1Q4AE62 458 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 AWAT1Q58HT5 328 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 PRR31Q5SQ13 230 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 HHATQ5VTY9 493 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 DCAF12L2Q5VW00 463 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 REEP3Q6NUK4 255 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 SLC22A24Q8N4F4 322 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 C10orf53Q8N6V4 93 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 GOLGA6L1Q8N7Z2 621 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 SLC30A7Q8NEW0 376 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 OR6X1Q8NH79 312 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 ZNF519Q8TB69 540 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 GTF2H4Q92759 462 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 MAL2Q969L2 176 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 TXNDC15Q96J42 360 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 MAELQ96JY0 434 aaKnown RBP12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 ZNF607Q96SK3 696 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 PAIP2Q9BPZ3 127 aaKnown RBP12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 TMPRSS13Q9BYE2 586 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 BCL2L14Q9BZR8 327 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 CDH20Q9HBT6 801 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 DECR2Q9NUI1 292 aa12.62□□□□□ -0.39
CCDC88B-201ENST00000301897 A0A0B4J2E0 115 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 A0A1B0GX12 115 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 UBDO15205 165 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 PLPP2O43688 288 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 OR6A2O95222 327 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 SNAP29O95721 258 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 IGHV2-5P01817 119 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 NUDT7P0C024 238 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 ARAFP10398 606 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 MAGEB1P43366 347 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 RBBP4Q09028 425 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 FOXL1Q12952 345 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 TBC1D28Q2M2D7 210 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 HFEQ30201 348 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 GCNT6Q5T4J0 391 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 SHISA2Q6UWI4 295 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 RANBP3LQ86VV4 465 aaPredicted RBP12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 ZNF584Q8IVC4 421 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 SKA3Q8IX90 412 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 MIER2Q8N344 545 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 OR5J2Q8NH18 312 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms