RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 OTOSQ8NHW6 89 aa21.63■■□□□ 1.05
TRIM54-201ENST00000296098 ZNF417Q8TAU3 575 aa21.63■■□□□ 1.05
TRIM54-201ENST00000296098 YIPF5Q969M3 257 aa21.63■■□□□ 1.05
TRIM54-201ENST00000296098 CCDC74BQ96LY2 380 aa21.63■■□□□ 1.05
TRIM54-201ENST00000296098 ZNF587Q96SQ5 575 aaPredicted RBP21.63■■□□□ 1.05
TRIM54-201ENST00000296098 SLITRK2Q9H156 845 aa21.63■■□□□ 1.05
TRIM54-201ENST00000296098 ANKRD10Q9NXR5 420 aa21.63■■□□□ 1.05
TRIM54-201ENST00000296098 PPIEQ9UNP9 301 aaKnown RBP21.63■■□□□ 1.05
TRIM54-201ENST00000296098 B9D1Q9UPM9 204 aa21.63■■□□□ 1.05
TRIM54-201ENST00000296098 TRBV5-5A0A0J9YX44 114 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 TRBV11-1A0A0K0K1C0 115 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 INMT-MINDY4F8WBC2 141 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 OR2T1O43869 369 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 ZNF354AO60765 605 aaPredicted RBP21.62■■□□□ 1.05
TRIM54-201ENST00000296098 HLA-DQA2P01906 255 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 PLA1AQ53H76 456 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 OR5M10Q6IEU7 315 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 OR2G2Q8NGZ5 317 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 ST8SIA1Q92185 356 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 NSMAFQ92636 917 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 ZFP3Q96NJ6 502 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 FSCN3Q9NQT6 498 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 MRPL39Q9NYK5 338 aaKnown RBP21.62■■□□□ 1.05
TRIM54-201ENST00000296098 VSX1Q9NZR4 365 aaPredicted RBP21.62■■□□□ 1.05
TRIM54-201ENST00000296098 KCNG2Q9UJ96 466 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 MRPS7Q9Y2R9 242 aaKnown RBP21.62■■□□□ 1.05
TRIM54-201ENST00000296098 V9GY05 133 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 CCDC163A0A0D9SF12 145 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 SUMO3P55854 103 aaPredicted RBP21.62■■□□□ 1.05
TRIM54-201ENST00000296098 DGCR2P98153 550 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 CD83Q01151 205 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 C17orf67Q0P5P2 114 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 SLC36A2Q495M3 483 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 RNASE12Q5GAN4 147 aaKnown RBP21.62■■□□□ 1.05
TRIM54-201ENST00000296098 BEX2Q9BXY8 128 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 COMMD4Q9H0A8 199 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 TP63Q9H3D4 680 aaPredicted RBP21.62■■□□□ 1.05
TRIM54-201ENST00000296098 TCF7L1Q9HCS4 588 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 SUSD2Q9UGT4 822 aa21.62■■□□□ 1.05
TRIM54-201ENST00000296098 A0A1W2PPC1 479 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 TMEM212A6NML5 194 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 OR4C45A6NMZ5 311 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 ZNF432O94892 652 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 CD3GP09693 182 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 ARSBP15848 533 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 BTCP35070 178 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 CENPAP49450 140 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 SRP9P49458 86 aaKnown RBP21.61■■□□□ 1.05
TRIM54-201ENST00000296098 EMP2P54851 167 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 MRPS15P82914 257 aaKnown RBP21.61■■□□□ 1.05
TRIM54-201ENST00000296098 INSM1Q01101 510 aaPredicted RBP21.61■■□□□ 1.05
TRIM54-201ENST00000296098 NTRK2Q16620 822 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 HLA-BQ31612 363 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 TOMM5Q8N4H5 51 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 HGDQ93099 445 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 RELTQ969Z4 430 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 FYTTD1Q96QD9 318 aaKnown RBP21.61■■□□□ 1.05
TRIM54-201ENST00000296098 RABL2AQ9UBK7 228 aaPredicted RBP21.61■■□□□ 1.05
TRIM54-201ENST00000296098 ING1Q9UK53 422 aaPredicted RBP21.61■■□□□ 1.05
TRIM54-201ENST00000296098 PILRBQ9UKJ0 227 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 RABL2BQ9UNT1 228 aa21.61■■□□□ 1.05
TRIM54-201ENST00000296098 ZNF254O75437 659 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 HOXA6P31267 233 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 SOX2P48431 317 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 BLVRAP53004 296 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 IFITM2Q01629 132 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 ZNF385CQ66K41 422 aaPredicted RBP21.6■■□□□ 1.05
TRIM54-201ENST00000296098 BICRALQ6AI39 1079 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 STAC2Q6ZMT1 411 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 LRRC69Q6ZNQ3 347 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 CMTM4Q8IZR5 234 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 ZNF676Q8N7Q3 588 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 AMELYQ99218 206 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 GALNT9Q9HCQ5 603 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 SLCO1C1Q9NYB5 712 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 IGLV1-36A0A0B4J1U3 117 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 A0A1B0GTH9 108 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 C2orf72A6NCS6 295 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 FTCDNL1E5RQL4 147 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 CTDSPLO15194 276 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 GSTZ1O43708 216 aaPredicted RBP21.6■■□□□ 1.05
TRIM54-201ENST00000296098 SLC16A7O60669 478 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 BTG1P62324 171 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 RASGEF1BQ0VAM2 473 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 FAM199XQ6PEV8 388 aaPredicted RBP21.6■■□□□ 1.05
TRIM54-201ENST00000296098 OR6S1Q8NH40 331 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 ASB17Q8WXJ9 295 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 WDR77Q9BQA1 342 aaPredicted RBP21.6■■□□□ 1.05
TRIM54-201ENST00000296098 LIN7BQ9HAP6 207 aa21.6■■□□□ 1.05
TRIM54-201ENST00000296098 VSTM2BA6NLU5 285 aa21.59■■□□□ 1.05
TRIM54-201ENST00000296098 ZNF593O00488 134 aaPredicted RBP21.59■■□□□ 1.05
TRIM54-201ENST00000296098 DPP4P27487 766 aa21.59■■□□□ 1.05
TRIM54-201ENST00000296098 MELKQ14680 651 aa21.59■■□□□ 1.05
TRIM54-201ENST00000296098 FOXN4Q96NZ1 517 aa21.59■■□□□ 1.05
TRIM54-201ENST00000296098 OR8B4Q96RC9 309 aa21.59■■□□□ 1.05
TRIM54-201ENST00000296098 GFM1Q96RP9 751 aaKnown RBP21.59■■□□□ 1.05
TRIM54-201ENST00000296098 MRI1Q9BV20 369 aa21.59■■□□□ 1.05
TRIM54-201ENST00000296098 SLC22A23A1A5C7 686 aa21.58■■□□□ 1.05
TRIM54-201ENST00000296098 IQCJ-SCHIP1C9J366 451 aaPredicted RBP21.58■■□□□ 1.05
TRIM54-201ENST00000296098 SF3B4Q15427 424 aaKnown RBP eCLIP21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms