RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 BLKP51451 505 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 FAM109BQ6ICB4 259 aaPredicted RBP10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 NHLRC2Q8NBF2 726 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 OR2T27Q8NH04 317 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 ACPTQ9BZG2 426 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 ZNF552Q9H707 407 aaPredicted RBP10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 LMAN1LQ9HAT1 526 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 RAB27BO00194 218 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 DBHP09172 617 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 EDN3P14138 238 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 NCR3LG1Q68D85 454 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 OR7E24Q6IFN5 339 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 OR2W3Q7Z3T1 314 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 ZNF429Q86V71 674 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 VRK3Q8IV63 474 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 OR13C8Q8NGS7 320 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 YTHDF2Q9Y5A9 579 aaKnown RBP10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 RALGAPA1Q6GYQ0 2036 aa10.92□□□□□ -0.66
SHROOM3-201ENST00000296043 TMEM200CA6NKL6 621 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 KCNC3Q14003 757 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 THEM4Q5T1C6 240 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 DHRS13Q6UX07 377 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 MMP26Q9NRE1 261 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 FGF4P08620 206 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 SRPXP78539 464 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 AQP6Q13520 282 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 LTC4SQ16873 150 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 H7C1C5 153 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 HEXAP06865 529 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 DPP4P27487 766 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 SFTPDP35247 375 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 CDONQ4KMG0 1287 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 UBE2FQ969M7 185 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 ZNF778Q96MU6 729 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 TSSK2Q96PF2 358 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 NIFKQ9BYG3 293 aaKnown RBP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 GPR88Q9GZN0 384 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 ARFGEF2Q9Y6D5 1785 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 ABHD6Q9BV23 337 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 STRAPQ9Y3F4 350 aaKnown RBP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 ADH5P11766 374 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 FUT1P19526 365 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 PRR27Q6MZM9 219 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 KHSRPQ92945 711 aaKnown RBP eCLIP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 UCN3Q969E3 161 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 ZNF407Q9C0G0 2248 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 NFAT5O94916 1531 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 RPL7P18124 248 aaKnown RBP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 GALR1P47211 349 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 PRPS1P60891 318 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 Q6ZTK2 550 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 NKX3-1Q99801 234 aaPredicted RBP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 CTDSP1Q9GZU7 261 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 PKDREJQ9NTG1 2253 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 OPN5Q6U736 354 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 ASPGQ86U10 573 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 ZNF100Q8IYN0 542 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 C19orf47Q8N9M1 422 aaKnown RBP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 DMBX1Q8NFW5 382 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 WDR89Q96FK6 387 aaPredicted RBP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 TAAR9Q96RI9 348 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 ALG12Q9BV10 488 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 A0A1B0GV90 55 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 C2orf72A6NCS6 295 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 M0QZK8 103 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 GGCTO75223 188 aaKnown RBP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 F2P00734 622 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 STK19P49842 368 aaPredicted RBP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 OR5M10Q6IEU7 315 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 TMEM59Q9BXS4 323 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 ANKRD19PQ9H560 264 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 NXT1Q9UKK6 140 aaKnown RBP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 CHRNB4P30926 498 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 MRPL49Q13405 166 aaKnown RBP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 UBXN2BQ14CS0 331 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 RAB6CQ53S08 254 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 FRMPD2BQ6IN97 320 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 TRIB3Q96RU7 358 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 SLC2A11Q9BYW1 496 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 RAB6CQ9H0N0 254 aa10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 EXOGQ9Y2C4 368 aaKnown RBP10.91□□□□□ -0.66
SHROOM3-201ENST00000296043 TRBV23-1A0A0A0MS06 115 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 OTUD1Q5VV17 481 aaPredicted RBP10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 TMEM244Q5VVB8 128 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 LRIG1Q96JA1 1093 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 MBOAT4Q96T53 435 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 PRTFDC1Q9NRG1 225 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 PCDHGA9Q9Y5G4 932 aaKnown RBP10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 TNS2Q63HR2 1409 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 SRMP19623 302 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 PSMB6P28072 239 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 CSNK1A1LQ8N752 337 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 GPR20Q99678 358 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 POMT2Q9UKY4 750 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 INPP5JQ15735 1006 aaPredicted RBP10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 RAET1LQ5VY80 246 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 LARP4Q71RC2 724 aaKnown RBP eCLIP10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 OR5B3Q8NH48 314 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 FAM3DQ96BQ1 224 aa10.9□□□□□ -0.66
SHROOM3-201ENST00000296043 CXorf58Q96LI9 332 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms