RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 GSN-AS1Q9NRJ2 163 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 FLRT3Q9NZU0 649 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TBC1D3DA0A087WVF3 549 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TBC1D3IA0A087WXS9 549 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TBC1D3KA0A087X1G2 549 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TBC1D3BA6NDS4 549 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 C5orf51A6NDU8 294 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TBC1D3FA6NER0 549 aaPredicted RBP13.1□□□□□ -0.31
SDC1-201ENST00000254351 TBC1D3LB9A6J9 549 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 H7C417 338 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 RAB3DO95716 219 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 OLFM2O95897 454 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 F13BP05160 661 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 S100A9P06702 114 aaKnown RBP13.1□□□□□ -0.31
SDC1-201ENST00000254351 TBC1D3HP0C7X1 549 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 AKR1C4P17516 323 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 SLC6A6P31641 620 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 CCKBRP32239 447 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 RFC3P40938 356 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 MLC1Q15049 377 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 MLF2Q15773 248 aaPredicted RBP13.1□□□□□ -0.31
SDC1-201ENST00000254351 TBC1D3GQ6DHY5 549 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TBC1D3CQ6IPX1 549 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 LEG1Q6P5S2 330 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TMEM64Q6YI46 380 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TBC1D3Q8IZP1 549 aaPredicted RBP13.1□□□□□ -0.31
SDC1-201ENST00000254351 OR1M1Q8NGA1 313 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 OR4E2Q8NGC2 313 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 GLYATL2Q8WU03 294 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 C20orf24Q9BUV8 137 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 MTFP1Q9UDX5 166 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 TRPM6Q9BX84 2022 aa13.1□□□□□ -0.31
SDC1-201ENST00000254351 SSX5O60225 188 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 SOD2P04179 222 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 C8AP07357 584 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 AKAIN1P0CW23 69 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 PGAM2P15259 253 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 ITGB8P26012 769 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 DDX6P26196 483 aaKnown RBP eCLIP13.09□□□□□ -0.318e-7■■■■□ 24
SDC1-201ENST00000254351 PRSS3P35030 304 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 AVPI1Q5T686 147 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 TMPPEQ6ZT21 453 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 OR2L13Q8N349 312 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 EIF4E3Q8N5X7 224 aaKnown RBP13.09□□□□□ -0.31
SDC1-201ENST00000254351 PHOSPHO1Q8TCT1 267 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 ISOC2Q96AB3 205 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 FRRS1LQ9P0K9 344 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 MBD2Q9UBB5 411 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 CES1P1Q9UKY3 287 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 GGT3PA6NGU5 568 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 TBX19O60806 448 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 CLEC3AO75596 197 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 DAOP14920 347 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 CD53P19397 219 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 EMDP50402 254 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 PSMD4P55036 377 aaKnown RBP13.09□□□□□ -0.31
SDC1-201ENST00000254351 DHRS2Q13268 280 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 SMCO1Q147U7 214 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 SLC22A6Q4U2R8 563 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 SLC35D2Q76EJ3 337 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 SLC29A4Q7RTT9 530 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 LRRC25Q8N386 305 aaPredicted RBP13.09□□□□□ -0.31
SDC1-201ENST00000254351 ROBO4Q8WZ75 1007 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 ZNF681Q96N22 645 aa13.09□□□□□ -0.31
SDC1-201ENST00000254351 RPH3AQ9Y2J0 694 aaPredicted RBP13.09□□□□□ -0.31
SDC1-201ENST00000254351 MTCL1Q9Y4B5 1905 aaKnown RBP13.08□□□□□ -0.31
SDC1-201ENST00000254351 MEX3AA1L020 520 aaKnown RBP13.08□□□□□ -0.31
SDC1-201ENST00000254351 DCDC2BA2VCK2 349 aa13.08□□□□□ -0.31
SDC1-201ENST00000254351 IGLON5A6NGN9 336 aa13.08□□□□□ -0.31
SDC1-201ENST00000254351 DUXAA6NLW8 204 aa13.08□□□□□ -0.31
SDC1-201ENST00000254351 SOX1O00570 391 aaPredicted RBP13.08□□□□□ -0.31
SDC1-201ENST00000254351 EIF4E2O60573 245 aaKnown RBP13.08□□□□□ -0.31
SDC1-201ENST00000254351 SPI1P17947 270 aa13.08□□□□□ -0.31
SDC1-201ENST00000254351 ADH6P28332 368 aa13.08□□□□□ -0.31
SDC1-201ENST00000254351 PBX2P40425 430 aa13.08□□□□□ -0.31
SDC1-201ENST00000254351 ID4P47928 161 aa13.08□□□□□ -0.31
SDC1-201ENST00000254351 CLINT1Q14677 625 aa13.08□□□□□ -0.31
SDC1-201ENST00000254351 C12orf40Q86WS4 652 aa13.08□□□□□ -0.31
SDC1-201ENST00000254351 INO80EQ8NBZ0 244 aaPredicted RBP13.08□□□□□ -0.31
SDC1-201ENST00000254351 OR2L5Q8NG80 312 aa13.08□□□□□ -0.31
SDC1-201ENST00000254351 NXPE3Q969Y0 559 aa13.08□□□□□ -0.31
SDC1-201ENST00000254351 GPN3Q9UHW5 284 aaPredicted RBP13.08□□□□□ -0.31
SDC1-201ENST00000254351 SCN5AQ14524 2016 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 EYSQ5T1H1 3165 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 RAB40ALP0C0E4 278 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 CCR4P51679 360 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 RAB33AQ14088 237 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 RD3Q7Z3Z2 195 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 OR6N1Q8NGY5 312 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 SFXN5Q8TD22 340 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 RAB40AQ8WXH6 277 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 C14orf79Q96F83 325 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 CGGBP1Q9UFW8 167 aaPredicted RBP13.08□□□□□ -0.32
SDC1-201ENST00000254351 CTAG2O75638 210 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 ITGA5P08648 1049 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 PRKXP51817 358 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 NKAIN2Q5VXU1 208 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 PRSS41Q7RTY9 318 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 CCDC36Q8IYA8 594 aa13.08□□□□□ -0.32
SDC1-201ENST00000254351 OR5T3Q8NGG3 340 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms