RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 DIRAS1O95057 198 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 CDRT1O95170 752 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 UTS2O95399 124 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 DIRAS3O95661 229 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 BAG2O95816 211 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 CCNE2O96020 404 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 AK1P00568 194 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 IGHV2-5P01817 119 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 PRB1P04280 392 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 GAPDHP04406 335 aaKnown RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 ALDOBP05062 364 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 KRT8P05787 483 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 IGKV4-1P06312 121 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 KLK3P07288 261 aaPredicted RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 CAPN1P07384 714 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 CSF3P09919 207 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 CALCBP10092 127 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 PRPS2P11908 318 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 GAP43P17677 238 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 IMPDH1P20839 514 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 CALB2P22676 271 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 PSMA2P25787 234 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 NPY1RP25929 384 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 IL12AP29459 219 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 GDI1P31150 447 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 KIF5BP33176 963 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 HRH1P35367 487 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 VHLP40337 213 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 SLC26A3P40879 764 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 MDH1P40925 334 aaKnown RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 CD86P42081 329 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 GPR6P46095 362 aaPredicted RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 YAP1P46937 504 aaKnown RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 GSSP48637 474 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TDO2P48775 406 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 RGS4P49798 205 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 CCR8P51685 355 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 KRTAP12-1P59990 96 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 CDK16Q00536 496 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 IL1RL1Q01638 556 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ZNF92Q03936 586 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ZNF616Q08AN1 781 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 KLHL30Q0D2K2 578 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ASPHQ12797 758 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 AQP6Q13520 282 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 OR5I1Q13606 314 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 FAM53BQ14153 422 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 SELPLGQ14242 412 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 OXA1LQ15070 435 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 PON2Q15165 354 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TAF9Q16594 264 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 POU2AF1Q16633 256 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 DGUOKQ16854 277 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 SFT2D3Q587I9 215 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 SPIN3Q5JUX0 258 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 SAMD4BQ5PRF9 694 aaKnown RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 C10orf120Q5SQS8 335 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 BEND3Q5T5X7 828 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TTC23Q5W5X9 447 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 FBXW9Q5XUX1 488 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ATL3Q6DD88 541 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 NANOGP8Q6NSW7 305 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 WDR59Q6PJI9 974 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 UNQ9165/PRO28630Q6UXU0 137 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 FBXW12Q6X9E4 464 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ZNF493Q6ZR52 646 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 SLC25A48Q6ZT89 311 aaKnown RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 STRADAQ7RTN6 431 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 BHLHA15Q7RTS1 189 aaPredicted RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 ZNF571Q7Z3V5 609 aaPredicted RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 THOC6Q86W42 341 aaKnown RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 ZNF573Q86YE8 665 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 EGFL6Q8IUX8 553 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 SLC35F2Q8IXU6 374 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 CENPLQ8N0S6 344 aaPredicted RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 TMEM123Q8N131 208 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ARRDC1Q8N5I2 433 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 MIR7-3HGQ8N6C7 128 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ANKFN1Q8N957 763 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ZNF557Q8N988 423 aaPredicted RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 GATSQ8NAP1 163 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 SYT14Q8NB59 555 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ST20-AS1Q8NBB2 130 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 MFSD9Q8NBP5 474 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 MSANTD4Q8NCY6 345 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 NOXO1Q8NFA2 376 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 STXBP6Q8NFX7 210 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 OR52H1Q8NGJ2 320 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 OR2T34Q8NGX1 318 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 OR6N1Q8NGY5 312 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 OR5W2Q8NH69 310 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 FAM110BQ8TC76 370 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 MGARPQ8TDB4 240 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 RNF139Q8WU17 664 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 C15orf40Q8WUR7 153 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 UFD1Q92890 307 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 UBE2E3Q969T4 207 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 MRGPRFQ96AM1 343 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 SGK3Q96BR1 496 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 DNAJC19Q96DA6 116 aa0.13□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms