RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 NR4A2P43354 598 aa19.44■□□□□ 0.7
CLN6-224ENST00000638076 ACKR1Q16570 336 aa19.44■□□□□ 0.7
CLN6-224ENST00000638076 PAPD4Q6PIY7 484 aaKnown RBP19.44■□□□□ 0.7
CLN6-224ENST00000638076 PIGKQ92643 395 aa19.44■□□□□ 0.7
CLN6-224ENST00000638076 IKZF2Q9UKS7 526 aa19.44■□□□□ 0.7
CLN6-224ENST00000638076 PI4KAP42356 2102 aa19.44■□□□□ 0.7
CLN6-224ENST00000638076 HMX3A6NHT5 357 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 ABHD16AO95870 558 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 EMP2P54851 167 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 RPL27P61353 136 aaKnown RBP19.43■□□□□ 0.7
CLN6-224ENST00000638076 MISPQ8IVT2 679 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 MAP6Q96JE9 813 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 KLHL15Q96M94 604 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 INTS14Q96SY0 518 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 IER2Q9BTL4 223 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 SLC25A18Q9H1K4 315 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 TSPAN10Q9H1Z9 355 aaPredicted RBP19.43■□□□□ 0.7
CLN6-224ENST00000638076 FRRS1LQ9P0K9 344 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 SUSD2Q9UGT4 822 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 A8MV72 311 aaPredicted RBP19.43■□□□□ 0.7
CLN6-224ENST00000638076 HOXA6P31267 233 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 ALKBH1Q13686 389 aaKnown RBP19.43■□□□□ 0.7
CLN6-224ENST00000638076 PYHIN1Q6K0P9 492 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 ASB18Q6ZVZ8 466 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 EID2Q8N6I1 236 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 NUBPLQ8TB37 319 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 UBASH3BQ8TF42 649 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 THEM6Q8WUY1 208 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 TRIM63Q969Q1 353 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 ST6GAL2Q96JF0 529 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 NEK6Q9HC98 313 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 GALNT9Q9HCQ5 603 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 APMAPQ9HDC9 416 aa19.43■□□□□ 0.7
CLN6-224ENST00000638076 ASCC3Q8N3C0 2202 aaKnown RBP19.43■□□□□ 0.7
CLN6-224ENST00000638076 TRBV11-1A0A0K0K1C0 115 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 DXOO77932 396 aaKnown RBP19.42■□□□□ 0.7
CLN6-224ENST00000638076 OR6A2O95222 327 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 AHSA1O95433 338 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 ALOX5APP20292 161 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 TBRG1Q3YBR2 411 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 ZNF385CQ66K41 422 aaPredicted RBP19.42■□□□□ 0.7
CLN6-224ENST00000638076 ZNF519Q8TB69 540 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 STK35Q8TDR2 534 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 GUCD1Q96NT3 240 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 DERL3Q96Q80 235 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 NPAS1Q99742 590 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 WDR77Q9BQA1 342 aaPredicted RBP19.42■□□□□ 0.7
CLN6-224ENST00000638076 PRSS37A4D1T9 235 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 EEF1E1O43324 174 aaKnown RBP19.42■□□□□ 0.7
CLN6-224ENST00000638076 PDGFBP01127 241 aaPredicted RBP19.42■□□□□ 0.7
CLN6-224ENST00000638076 MAMSTRQ6ZN01 415 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 OR5AK2Q8NH90 309 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 MAFAQ8NHW3 353 aaPredicted RBP19.42■□□□□ 0.7
CLN6-224ENST00000638076 TMEM234Q8WY98 164 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 MNTQ99583 582 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 GAREM1Q9H706 876 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 ING1Q9UK53 422 aaPredicted RBP19.42■□□□□ 0.7
CLN6-224ENST00000638076 SPATA2Q9UM82 520 aa19.42■□□□□ 0.7
CLN6-224ENST00000638076 PPIEQ9UNP9 301 aaKnown RBP19.42■□□□□ 0.7
CLN6-224ENST00000638076 TMEM221A6NGB7 291 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 TMEM200CA6NKL6 621 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 PLPP3O14495 311 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 TRIM3O75382 744 aaPredicted RBP19.41■□□□□ 0.7
CLN6-224ENST00000638076 TRAPPC2P0DI81 140 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 TRAPPC2BP0DI82 140 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 DDOSTP39656 456 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 C17orf67Q0P5P2 114 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 TATDN3Q17R31 274 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 OTPQ5XKR4 325 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 LCN10Q6JVE6 187 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 UTS2BQ765I0 119 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 PPP1R3BQ86XI6 285 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 ZNF417Q8TAU3 575 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 ZNF671Q8TAW3 534 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 PMEPA1Q969W9 287 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 UPRTQ96BW1 309 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 FOXN4Q96NZ1 517 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 ZNF587Q96SQ5 575 aaPredicted RBP19.41■□□□□ 0.7
CLN6-224ENST00000638076 GFI1Q99684 422 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 TXNIPQ9H3M7 391 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 NUFIP1Q9UHK0 495 aaKnown RBP19.41■□□□□ 0.7
CLN6-224ENST00000638076 B9D1Q9UPM9 204 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 TMEM14AQ9Y6G1 99 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 COL6A3P12111 3177 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 A0A1B0GTH9 108 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 ANKUB1A6NFN9 424 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 VSTM2BA6NLU5 285 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 HLA-DQA2P01906 255 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 CFIP05156 583 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 CENPAP49450 140 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 EGR3Q06889 387 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 ESPNLQ6ZVH7 1005 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 ZNF433Q8N7K0 673 aaPredicted RBP19.41■□□□□ 0.7
CLN6-224ENST00000638076 HGDQ93099 445 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 C8orf44Q96CB5 159 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 KCNG2Q9UJ96 466 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 FKBP7Q9Y680 259 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 ALPK2Q86TB3 2170 aa19.41■□□□□ 0.7
CLN6-224ENST00000638076 OR2T1O43869 369 aa19.4■□□□□ 0.7
CLN6-224ENST00000638076 CLDN20P56880 219 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms