RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 HSF1Q00613 529 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 ZNF85Q03923 595 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 RUNX1T1Q06455 604 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 ZNF322Q6U7Q0 402 aaPredicted RBP15.12■□□□□ 0.01
CLN3-252ENST00000636907 PXKQ7Z7A4 578 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 SULF2Q8IWU5 870 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 OR6V1Q8N148 313 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 OR2T4Q8NH00 348 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 ASB10Q8WXI3 467 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 TIMP4Q99727 224 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 OR2B2Q9GZK3 357 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 ISG20L2Q9H9L3 353 aaKnown RBP15.12■□□□□ 0.01
CLN3-252ENST00000636907 MOKQ9UQ07 419 aa15.12■□□□□ 0.01
CLN3-252ENST00000636907 CAB39Q9Y376 341 aaPredicted RBP15.12■□□□□ 0.01
CLN3-252ENST00000636907 OR5H15A6NDH6 313 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 NPIPB13A6NJU9 1138 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 NPIPB4C9JG80 1138 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 NPIPA5E9PKD4 350 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 SLC22A1O15245 554 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 PMS2P2O95744 297 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 LALBAP00709 142 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 KLK2P20151 261 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 GDF1P27539 372 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 DAP3P51398 398 aaKnown RBP15.11■□□□□ 0.01
CLN3-252ENST00000636907 RAC1P63000 192 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 ACTC1P68032 377 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 ACTA1P68133 377 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 SLC35A1P78382 337 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 MFAP5Q13361 173 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 GALEQ14376 348 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 EEF1A1P5Q5VTE0 462 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 LIPKQ5VXJ0 399 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 SLC35D2Q76EJ3 337 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 WDFY1Q8IWB7 410 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 SLC35F2Q8IXU6 374 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 MDS2Q8NDY4 140 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 ZNF552Q9H707 407 aaPredicted RBP15.11■□□□□ 0.01
CLN3-252ENST00000636907 ISYNA1Q9NPH2 558 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 MED29Q9NX70 200 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 VSX1Q9NZR4 365 aaPredicted RBP15.11■□□□□ 0.01
CLN3-252ENST00000636907 KLK13Q9UKR3 277 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 NPIPA1Q9UND3 350 aa15.11■□□□□ 0.01
CLN3-252ENST00000636907 MRPS18CQ9Y3D5 142 aaKnown RBP15.11■□□□□ 0.01
CLN3-252ENST00000636907 A0A1W2PQL4 384 aaPredicted RBP15.1■□□□□ 0.01
CLN3-252ENST00000636907 CDK2AP1O14519 115 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 BCL10O95999 233 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 CPEP16870 476 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 ZNF182P17025 639 aaPredicted RBP15.1■□□□□ 0.01
CLN3-252ENST00000636907 PAX7P23759 505 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 TGFBR1P36897 503 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 CDC20Q12834 499 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 LSAMPQ13449 338 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 ZNF239Q16600 458 aaKnown RBP15.1■□□□□ 0.01
CLN3-252ENST00000636907 WIPI1Q5MNZ9 446 aaPredicted RBP15.1■□□□□ 0.01
CLN3-252ENST00000636907 NHLRC1Q6VVB1 395 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 TMPRSS11AQ6ZMR5 421 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 SSX6Q7RTT6 188 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 PHC2Q8IXK0 858 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 RFLNBQ8N5W9 214 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 ZNF511Q8NB15 262 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 NDNFQ8TB73 568 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 TXNDC15Q96J42 360 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 KLHL15Q96M94 604 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 NUAK2Q9H093 628 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 RERGLQ9H628 205 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 NDUFB11Q9NX14 153 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 POLHQ9Y253 713 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 MED12Q93074 2177 aa15.1■□□□□ 0.01
CLN3-252ENST00000636907 A0A0J9YW62 118 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 SLC22A23A1A5C7 686 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 AQP7P3A6NL99 342 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 ZNF891A8MT65 544 aaPredicted RBP15.09■□□□□ 0.01
CLN3-252ENST00000636907 RAMP1O60894 148 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 SP1P08047 785 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 RFC3P40938 356 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 CCL11P51671 97 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 RPS3AP61247 264 aaKnown RBP15.09■□□□□ 0.01
CLN3-252ENST00000636907 SOWAHCQ53LP3 525 aaPredicted RBP15.09■□□□□ 0.01
CLN3-252ENST00000636907 SLC25A25Q6KCM7 469 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 KLBQ86Z14 1044 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 ZFP41Q8N8Y5 198 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 KCNE4Q8WWG9 221 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 SFXN2Q96NB2 322 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 CHCHD6Q9BRQ6 235 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 ZNF703Q9H7S9 590 aaPredicted RBP15.09■□□□□ 0.01
CLN3-252ENST00000636907 B9D1Q9UPM9 204 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 PCDHGB7Q9Y5F8 929 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 NOX1Q9Y5S8 564 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 FKBP7Q9Y680 259 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 PTPRZ1P23471 2315 aaPredicted RBP15.09■□□□□ 0.01
CLN3-252ENST00000636907 LOC100506127A0A0U1RQW1 187 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 PNMA8CA0A1B0GUJ8 204 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 A6NIZ1 184 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 GJE1A6NN92 205 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 NME2P1O60361 137 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 GPX5O75715 221 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 OR2T7P0C7T2 308 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 NME2P22392 152 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 CLDN20P56880 219 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 RAP1BP61224 184 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms