RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 LINC00869P0C866 280 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 HSMCR30P0CW71 290 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 SLC2A5P22732 501 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 COL8A2P25067 703 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 GNA11P29992 359 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 NAMPTP43490 491 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 CX3CR1P49238 355 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 CASP4P49662 377 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 SLC7A9P82251 487 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 AQP6Q13520 282 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 IRF4Q15306 451 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 IGFBP7Q16270 282 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 VAX1Q5SQQ9 334 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 HES5Q5TA89 166 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 UTS2BQ765I0 119 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 CCDC80Q76M96 950 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 BHLHA15Q7RTS1 189 aaPredicted RBP1□□□□□ -2.25
SCN1A-208ENST00000625916 BIVMQ86UB2 503 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 RIMKLAQ8IXN7 391 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 ZADH2Q8N4Q0 377 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 MREGQ8N565 214 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 ARL10Q8N8L6 244 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 FADS6Q8N9I5 356 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 SYT14Q8NB59 555 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 SDR42E1Q8WUS8 393 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 CTNNBL1Q8WYA6 563 aaPredicted RBP1□□□□□ -2.25
SCN1A-208ENST00000625916 CLCC1Q96S66 551 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 GABARAPL3Q9BY60 117 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 MRPL47Q9HD33 250 aaKnown RBP1□□□□□ -2.25
SCN1A-208ENST00000625916 HMG20AQ9NP66 347 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 EXD2Q9NVH0 621 aa1□□□□□ -2.25
SCN1A-208ENST00000625916 PACSIN2Q9UNF0 486 aaPredicted RBP1□□□□□ -2.25
SCN1A-208ENST00000625916 FRMPD3Q5JV73 1810 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 SHANK1Q9Y566 2161 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 H0YHG0 523 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 CCER2I3L3R5 266 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 KMOO15229 486 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 RAD51BO15315 384 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 MED7O43513 233 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 DIRAS1O95057 198 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 GAPDHP04406 335 aaKnown RBP0.99□□□□□ -2.25
SCN1A-208ENST00000625916 IL4P05112 153 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 RORAP35398 523 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 SOX6P35712 828 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 RPL13AP40429 203 aaKnown RBP0.99□□□□□ -2.25
SCN1A-208ENST00000625916 ESRRGP62508 458 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 RPS21P63220 83 aaKnown RBP0.99□□□□□ -2.25
SCN1A-208ENST00000625916 SYCNQ0VAF6 134 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 ERCC8Q13216 396 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 PLD1Q13393 1074 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 SLC39A6Q13433 755 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 SELPLGQ14242 412 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 PRPSAP1Q14558 356 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 GINS1Q14691 196 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 DPYSL2Q16555 572 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 DUSP7Q16829 419 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 USH1GQ495M9 461 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 DMRTC1Q5HYR2 192 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 C10orf120Q5SQS8 335 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 LINC00173Q6ZV60 143 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 STRADAQ7RTN6 431 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 ZNF573Q86YE8 665 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 LGI3Q8N145 548 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 ZNF619Q8N2I2 560 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 OSR2Q8N2R0 312 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 OR52H1Q8NGJ2 320 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 OR4D5Q8NGN0 318 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 OR10T2Q8NGX3 314 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 CCDC110Q8TBZ0 833 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 ESR2Q92731 530 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 OSTF1Q92882 214 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 UBE2E3Q969T4 207 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 LRRC58Q96CX6 371 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 CXorf40BQ96DE9 158 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 WFIKKN1Q96NZ8 548 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 OXGR1Q96P68 337 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 CHAC1Q9BUX1 264 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 GPATCH2LQ9NWQ4 482 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 SAMHD1Q9Y3Z3 626 aaKnown RBP0.99□□□□□ -2.25
SCN1A-208ENST00000625916 KIF3AQ9Y496 699 aa0.99□□□□□ -2.25
SCN1A-208ENST00000625916 TET2Q6N021 2002 aaPredicted RBP0.99□□□□□ -2.25
SCN1A-208ENST00000625916 YEATS2Q9ULM3 1422 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 PHF3Q92576 2039 aaKnown RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 IGHV5-10-1A0A0J9YXX1 117 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 OR5B21A6NL26 309 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 ZNF850A8MQ14 1090 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 ZNF878C9JN71 531 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 SGK1O00141 431 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 TOM1O60784 492 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 GABARAPO95166 117 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 DIRAS3O95661 229 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 IGHV1-8P0DP01 117 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 TCN1P20061 433 aaPredicted RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 CHI3L1P36222 383 aaPredicted RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 GPR6P46095 362 aaPredicted RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 CCR8P51685 355 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 NCBP2P52298 156 aaKnown RBP eCLIP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 CRYBB1P53674 252 aaPredicted RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 PITPNAQ00169 270 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 IL1RL1Q01638 556 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms