RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SAMD14Q8IZD0 417 aaPredicted RBP9.89□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF561Q8N587 486 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 RPS4Y2Q8TD47 263 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 STK35Q8TDR2 534 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 TCTEX1D2Q8WW35 142 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 BPIFA2Q96DR5 249 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 HSPA12BQ96MM6 686 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 PRSS27Q9BQR3 290 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 PAPOLGQ9BWT3 736 aaKnown RBP9.89□□□□□ -0.83
UPF3A-212ENST00000619079 TEX101Q9BY14 249 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 PCBD2Q9H0N5 130 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 DPEP2Q9H4A9 486 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 MTHFD2LQ9H903 347 aaPredicted RBP9.89□□□□□ -0.83
UPF3A-212ENST00000619079 PRMT8Q9NR22 394 aaPredicted RBP9.89□□□□□ -0.83
UPF3A-212ENST00000619079 SLC25A13Q9UJS0 675 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 CDV3Q9UKY7 258 aaKnown RBP9.89□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF337Q9Y3M9 751 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 NOTCH4Q99466 2003 aa9.89□□□□□ -0.83
UPF3A-212ENST00000619079 LRIT2A6NDA9 550 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF729A6NN14 1252 aaPredicted RBP9.88□□□□□ -0.83
UPF3A-212ENST00000619079 ERAL1O75616 437 aaKnown RBP9.88□□□□□ -0.83
UPF3A-212ENST00000619079 CERS1P27544 350 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 ADH7P40394 386 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 PGDP52209 483 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 PNLIPRP2P54317 469 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 LTBQ06643 244 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 TAF13Q15543 124 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 INPP5JQ15735 1006 aaPredicted RBP9.88□□□□□ -0.83
UPF3A-212ENST00000619079 THSD4Q6ZMP0 1018 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 NAA40Q86UY6 237 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF227Q86WZ6 799 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 SLC35F3Q8IY50 421 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 LMNTD1Q8N9Z9 388 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 CYB561A3Q8NBI2 242 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 NUP43Q8NFH3 380 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 PHOSPHO1Q8TCT1 267 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 LRIG1Q96JA1 1093 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 RPP25Q9BUL9 199 aaKnown RBP9.88□□□□□ -0.83
UPF3A-212ENST00000619079 ACTRT3Q9BYD9 372 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 MED31Q9Y3C7 131 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 EFCAB7A8K855 629 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 RPN2P04844 631 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 CSNK2A2P19784 350 aaPredicted RBP9.88□□□□□ -0.83
UPF3A-212ENST00000619079 CD34P28906 385 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 SLC6A6P31641 620 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 HSD17B2P37059 387 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 CTSOP43234 321 aaPredicted RBP9.88□□□□□ -0.83
UPF3A-212ENST00000619079 RPS15P62841 145 aaKnown RBP9.88□□□□□ -0.83
UPF3A-212ENST00000619079 PJVKQ0ZLH3 352 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 SLC9A5Q14940 896 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 ARHGAP19Q14CB8 494 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 AGERQ15109 404 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 TMEM35AQ53FP2 167 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 STEAP1BQ6NZ63 245 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 ANKRD16Q6P6B7 361 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 STAC2Q6ZMT1 411 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 RFLNBQ8N5W9 214 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 OR13C2Q8NGS9 318 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 ADAMTS15Q8TE58 950 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 PAQR8Q8TEZ7 354 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 ELSPBP1Q96BH3 223 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 ZC3H10Q96K80 434 aaKnown RBP9.88□□□□□ -0.83
UPF3A-212ENST00000619079 EDEM2Q9BV94 578 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 TRMT61BQ9BVS5 477 aaKnown RBP9.88□□□□□ -0.83
UPF3A-212ENST00000619079 PRSS16Q9NQE7 514 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 NCDNQ9UBB6 729 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 DMRT1Q9Y5R6 373 aa9.88□□□□□ -0.83
UPF3A-212ENST00000619079 OR6C76A6NM76 312 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 WASH3PC4AMC7 463 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 GYPBP06028 91 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 THBS1P07996 1170 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 FCARP24071 287 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 NDUFS1P28331 727 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 GDI1P31150 447 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 MPIP34949 423 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 CENPAP49450 140 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PRKXP51817 358 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 STARD6P59095 220 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 TAS2R19P59542 299 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 TEX30Q5JUR7 227 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 DRAM2Q6UX65 266 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 VITQ6UXI7 678 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 UBE3DQ7Z6J8 389 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 TRAPPC5Q8IUR0 188 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 TMEM151BQ8IW70 566 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 OR2L13Q8N349 312 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 WDSUB1Q8N9V3 476 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 SLC30A7Q8NEW0 376 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 PFN4Q8NHR9 129 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 OTUB2Q96DC9 234 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 RSPRY1Q96DX4 576 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF514Q96K75 400 aaPredicted RBP9.87□□□□□ -0.83
UPF3A-212ENST00000619079 LGR4Q9BXB1 951 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 TTTY10Q9BZA0 68 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 TRPV4Q9HBA0 871 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 IL21RQ9HBE5 538 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 C20orf141Q9NUB4 165 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 RCC2Q9P258 522 aaKnown RBP9.87□□□□□ -0.83
UPF3A-212ENST00000619079 GHRLQ9UBU3 117 aa9.87□□□□□ -0.83
UPF3A-212ENST00000619079 TAC3Q9UHF0 121 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms