RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.44■□□□□ 0.38
UPF3A-211ENST00000618700 FAM122BQ7Z309 247 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 OR8D4Q8NGM9 314 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 OR6X1Q8NH79 312 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 SSC4DQ8WTU2 575 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 CA5BP1Q8WTZ4 195 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 ASB10Q8WXI3 467 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 APH1AQ96BI3 265 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 SAMD8Q96LT4 415 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 ADAD1Q96M93 576 aaKnown RBP17.44■□□□□ 0.38
UPF3A-211ENST00000618700 EMC6Q9BV81 110 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 KATNB1Q9BVA0 655 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 PLA2G12AQ9BZM1 189 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 TXNIPQ9H3M7 391 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 EGLN3Q9H6Z9 239 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 ZNF556Q9HAH1 456 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 KIF17Q9P2E2 1029 aa17.44■□□□□ 0.38
UPF3A-211ENST00000618700 SLC35F4A4IF30 521 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 FAM90A27PA6NNH2 459 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 PDLIM1O00151 329 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 CLDN14O95500 239 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 SLC6A6P31641 620 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 RPL4P36578 427 aaKnown RBP17.43■□□□□ 0.38
UPF3A-211ENST00000618700 BIDP55957 195 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 PPP2R2BQ00005 443 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 ARMC4Q5T2S8 1044 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 KDM4DQ6B0I6 523 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 DPY19L2P2Q6ZN68 376 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 ZNF100Q8IYN0 542 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 ZNF610Q8N9Z0 462 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 TSPAN32Q96QS1 320 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 CIB1Q99828 191 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 OSBPL10Q9BXB5 764 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 POLDIP3Q9BY77 421 aaKnown RBP17.43■□□□□ 0.38
UPF3A-211ENST00000618700 SMURF2Q9HAU4 748 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 STX18Q9P2W9 335 aaKnown RBP17.43■□□□□ 0.38
UPF3A-211ENST00000618700 MALT1Q9UDY8 824 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 IL20RAQ9UHF4 553 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 PRSS50Q9UI38 385 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 TMEFF2Q9UIK5 374 aaPredicted RBP17.43■□□□□ 0.38
UPF3A-211ENST00000618700 POFUT2Q9Y2G5 429 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 ADAM18Q9Y3Q7 739 aa17.43■□□□□ 0.38
UPF3A-211ENST00000618700 FREM1Q5H8C1 2179 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 SPTBN1Q01082 2364 aaKnown RBP17.42■□□□□ 0.38
UPF3A-211ENST00000618700 H0YHG0 523 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 SOX14O95416 240 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 BCL10O95999 233 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 IGFBP1P08833 259 aaPredicted RBP17.42■□□□□ 0.38
UPF3A-211ENST00000618700 APEHP13798 732 aaKnown RBP17.42■□□□□ 0.38
UPF3A-211ENST00000618700 ASCL1P50553 236 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 RPL27P61353 136 aaKnown RBP17.42■□□□□ 0.38
UPF3A-211ENST00000618700 ERVK-25P63136 954 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 TOP3AQ13472 1001 aaPredicted RBP17.42■□□□□ 0.38
UPF3A-211ENST00000618700 FBXL19-AS1Q494R0 122 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 FAM205BPQ63HN1 556 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 ZNF474Q6S9Z5 364 aaPredicted RBP17.42■□□□□ 0.38
UPF3A-211ENST00000618700 LUZP2Q86TE4 346 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 PARP8Q8N3A8 854 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 ZNF519Q8TB69 540 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 SLCO5A1Q9H2Y9 848 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 DCLRE1BQ9H816 532 aa17.42■□□□□ 0.38
UPF3A-211ENST00000618700 PAPOLBQ9NRJ5 636 aaKnown RBP17.42■□□□□ 0.38
UPF3A-211ENST00000618700 FOXD3Q9UJU5 478 aaPredicted RBP17.42■□□□□ 0.38
UPF3A-211ENST00000618700 ZNF346Q9UL40 294 aaKnown RBP17.42■□□□□ 0.38
UPF3A-211ENST00000618700 ALPK2Q86TB3 2170 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 OR6C65A6NJZ3 312 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 BHLHE40O14503 412 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 SLC43A1O75387 559 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 CNOT4O95628 575 aaKnown RBP17.41■□□□□ 0.38
UPF3A-211ENST00000618700 TXNDC12O95881 172 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 OSMP13725 252 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 RUNX1T1Q06455 604 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 TFF3Q07654 80 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 SLC36A3Q495N2 470 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 TSPO2Q5TGU0 170 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 FBXW9Q5XUX1 488 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 Q6ZT83 130 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 HDDC2Q7Z4H3 204 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 C20orf196Q8IYI0 205 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 GABRG1Q8N1C3 465 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 ARIH2OSQ8N7S6 290 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 OR52L1Q8NGH7 329 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 SLC25A44Q96H78 314 aaPredicted RBP17.41■□□□□ 0.38
UPF3A-211ENST00000618700 LRR1Q96L50 414 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 RBM4BQ9BQ04 359 aaKnown RBP17.41■□□□□ 0.38
UPF3A-211ENST00000618700 RBM4Q9BWF3 364 aaKnown RBP17.41■□□□□ 0.38
UPF3A-211ENST00000618700 LINC00470Q9BZP3 86 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 SLC7A10Q9NS82 523 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 TBC1D23Q9NUY8 699 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 USE1Q9NZ43 259 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 CACNA1CQ13936 2221 aa17.41■□□□□ 0.38
UPF3A-211ENST00000618700 NKX2-6A6NCS4 301 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 ZNF726A6NNF4 738 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 EI24O14681 340 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 ARPC3O15145 178 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 PPP1R3DO95685 299 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 ALPLP05186 524 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 PGA4P0DJD7 388 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 PGA3P0DJD8 388 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 SDHAP31040 664 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms