RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 MEF2DQ14814 521 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 HMGN3Q15651 99 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 ZXDCQ2QGD7 858 aaPredicted RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 AWAT1Q58HT5 328 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 OLFML2AQ68BL7 652 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 OR2A2Q6IF42 318 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 CERS6Q6ZMG9 384 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 TPRG1Q6ZUI0 275 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 LINGO2Q7L985 606 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 SLC36A1Q7Z2H8 476 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 ADPRHL1Q8NDY3 354 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 TNFAIP8L1Q8WVP5 186 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 BADQ92934 168 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 FN3KRPQ9HA64 309 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 SLC25A13Q9UJS0 675 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 LNP1A1A4G5 178 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 PRAMEF25A6NGN4 478 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 SURF4O15260 269 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 OPN1SWP03999 348 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 LINC00271P0C7V0 271 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 LAMP1P11279 417 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 PCGF2P35227 344 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 XCR1P46094 333 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 ZNF84P51523 738 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 UBE2MP61081 183 aaKnown RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 EIF5AP63241 154 aaKnown RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 PNLIPRP3Q17RR3 467 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 BEX5Q5H9J7 111 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 HSD11B1LQ7Z5J1 315 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 OR7G2Q8NG99 324 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 OR1N1Q8NGS0 311 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 TERB2Q8NHR7 220 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 WRAP53Q9BUR4 548 aaKnown RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS39-214ENST00000614932 CHRNA9Q9UGM1 479 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 KCND3Q9UK17 655 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 FAM183AA6NL82 134 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 PYCARD-AS1I3L0S3 204 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 GGCTO75223 188 aaKnown RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 GCM2O75603 506 aaPredicted RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 BCHEP06276 602 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 SOD3P08294 240 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 OR12D1P0DN82 309 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 FABP4P15090 132 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 MAPK9P45984 424 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 RPS10P46783 165 aaKnown RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 EFNB1P98172 346 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 DDX39BQ13838 428 aaKnown RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 ACOT7LQ6ZUV0 252 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 UBE2R2Q712K3 238 aaPredicted RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 SLC16A14Q7RTX9 510 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 IQCHQ86VS3 1027 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 SFTPA1Q8IWL2 248 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 MUC20Q8N307 709 aaPredicted RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 OR2A12Q8NGT7 310 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 NUDCD2Q8WVJ2 157 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 OR8D1Q8WZ84 308 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 IRF7Q92985 503 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 IP6K3Q96PC2 410 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 RIOK2Q9BVS4 552 aaKnown RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 CRISPLD2Q9H0B8 497 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 UBQLN4Q9NRR5 601 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 PRODH2Q9UF12 536 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 PPT2Q9UMR5 302 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 MYO9BQ13459 2157 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 NUP214P35658 2090 aaPredicted RBP9.36□□□□□ -0.91
VPS39-214ENST00000614932 A0A087WUJ7 227 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 A0A0G2JK05 382 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 A0A0U1RQV5 110 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 SMCO3A2RU48 225 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 ZNF724A8MTY0 619 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 GRM6O15303 877 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 MAGEB4O15481 346 aaPredicted RBP9.36□□□□□ -0.91
VPS39-214ENST00000614932 TCF21O43680 179 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 OPN1LWP04000 364 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 CD74P04233 296 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 TYRP1P17643 537 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 SERPINF1P36955 418 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 VIPR2P41587 438 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 DHPSP49366 369 aaPredicted RBP9.36□□□□□ -0.91
VPS39-214ENST00000614932 SRSF11Q05519 484 aaKnown RBP9.36□□□□□ -0.91
VPS39-214ENST00000614932 CSRP2Q16527 193 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 MST1LQ2TV78 715 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 PDZD11Q5EBL8 140 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 C1orf185Q5T7R7 199 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 ESPNLQ6ZVH7 1005 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 ADIPOR2Q86V24 386 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 MAL2Q969L2 176 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 LRRC3BQ96PB8 259 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 FAM83CQ9BQN1 747 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 SULT4A1Q9BR01 284 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 OARD1Q9Y530 152 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 NINQ8N4C6 2090 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 TMEM272A0A1B0GTI8 110 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 A6NNC1 897 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 GRXCR1A8MXD5 290 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 FAM227AF5H4B4 570 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 OGG1O15527 345 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 CTNSO60931 367 aa9.36□□□□□ -0.91
VPS39-214ENST00000614932 SOCS5O75159 536 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms