RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 MGAT4BQ9UQ53 548 aa17.06■□□□□ 0.32
UPF1-209ENST00000600310 HCFC1P51610 2035 aa17.06■□□□□ 0.32
UPF1-209ENST00000600310 USP9YO00507 2555 aaPredicted RBP17.05■□□□□ 0.32
UPF1-209ENST00000600310 COL8A1P27658 744 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 FXYD6P3P58550 94 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 LGALS3BPQ08380 585 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 CAMK2DQ13557 499 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 MELKQ14680 651 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 CARD17Q5XLA6 110 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 ABHD12BQ7Z5M8 362 aaPredicted RBP17.05■□□□□ 0.32
UPF1-209ENST00000600310 IGFN1Q86VF2 1251 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 ASB10Q8WXI3 467 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 NRBF2Q96F24 287 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 SLC25A44Q96H78 314 aaPredicted RBP17.05■□□□□ 0.32
UPF1-209ENST00000600310 GPX7Q96SL4 187 aaPredicted RBP17.05■□□□□ 0.32
UPF1-209ENST00000600310 BDH2Q9BUT1 245 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 DGCR6LQ9BY27 220 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 TAS2R16Q9NYV7 291 aa17.05■□□□□ 0.32
UPF1-209ENST00000600310 PDP1Q9P0J1 537 aaPredicted RBP17.05■□□□□ 0.32
UPF1-209ENST00000600310 STX18Q9P2W9 335 aaKnown RBP17.05■□□□□ 0.32
UPF1-209ENST00000600310 FREM1Q5H8C1 2179 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 TUBAL3A6NHL2 446 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 MCIDASD6RGH6 385 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 KRT33AO76009 404 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 CD14P08571 375 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 ITGA5P08648 1049 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 MPGP29372 298 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 RPL4P36578 427 aaKnown RBP17.04■□□□□ 0.32
UPF1-209ENST00000600310 ARHGDIAP52565 204 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 FOXG1P55316 489 aaPredicted RBP17.04■□□□□ 0.32
UPF1-209ENST00000600310 RPL27P61353 136 aaKnown RBP17.04■□□□□ 0.32
UPF1-209ENST00000600310 SNTB1Q13884 538 aaKnown RBP17.04■□□□□ 0.32
UPF1-209ENST00000600310 SHQ1Q6PI26 577 aaKnown RBP17.04■□□□□ 0.32
UPF1-209ENST00000600310 SMARCD3Q6STE5 483 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 THSD4Q6ZMP0 1018 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 HDDC2Q7Z4H3 204 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 GPR137CQ8N3F9 429 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 ZNF433Q8N7K0 673 aaPredicted RBP17.04■□□□□ 0.32
UPF1-209ENST00000600310 STEAP2Q8NFT2 490 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 LRTOMTQ8WZ04 291 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 KISS1RQ969F8 398 aaPredicted RBP17.04■□□□□ 0.32
UPF1-209ENST00000600310 ALKBH3Q96Q83 286 aaPredicted RBP17.04■□□□□ 0.32
UPF1-209ENST00000600310 USB1Q9BQ65 265 aaKnown RBP17.04■□□□□ 0.32
UPF1-209ENST00000600310 KATNB1Q9BVA0 655 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 SLC24A3Q9HC58 644 aa17.04■□□□□ 0.32
UPF1-209ENST00000600310 ZNF346Q9UL40 294 aaKnown RBP17.04■□□□□ 0.32
UPF1-209ENST00000600310 CENPBD1B2RD01 187 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 ZNF587BE7ETH6 402 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 H3BNX3 289 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 RPL36A-HNRNPH2H7BZ11 118 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 ENTPD5O75356 428 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 LYZL6O75951 148 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 PPP3CBP16298 524 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 GSTM3P21266 225 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 IL32P24001 234 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 KIR2DL3P43628 341 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 RUNX1T1Q06455 604 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 TSC22D1Q15714 1073 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 RFX4Q33E94 735 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 PHYHD1Q5SRE7 291 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 CD300LDQ6UXZ3 194 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 DPY19L2P2Q6ZN68 376 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 ZNF620Q6ZNG0 422 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 RASSF6Q6ZTQ3 369 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 LINGO2Q7L985 606 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 BHLHA15Q7RTS1 189 aaPredicted RBP17.03■□□□□ 0.32
UPF1-209ENST00000600310 FAM122BQ7Z309 247 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 AMIGO2Q86SJ2 522 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 OR6N1Q8NGY5 312 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 OR5K1Q8NHB7 308 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 FANK1Q8TC84 345 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 TMEM54Q969K7 222 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 ZNF566Q969W8 418 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 GTPBP3Q969Y2 492 aaKnown RBP17.03■□□□□ 0.32
UPF1-209ENST00000600310 FEVQ99581 238 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 POLDIP3Q9BY77 421 aaKnown RBP17.03■□□□□ 0.32
UPF1-209ENST00000600310 MRPL13Q9BYD1 178 aaKnown RBP17.03■□□□□ 0.32
UPF1-209ENST00000600310 ACTR6Q9GZN1 396 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 OR52D1Q9H346 318 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 NRIP3Q9NQ35 241 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 NDRG3Q9UGV2 375 aa17.03■□□□□ 0.32
UPF1-209ENST00000600310 ERICH4A6NGS2 130 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 M0R3G1 203 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 TRMUO75648 421 aaKnown RBP17.02■□□□□ 0.32
UPF1-209ENST00000600310 IGHG1P01857 330 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 PGA4P0DJD7 388 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 PGA3P0DJD8 388 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 COX6B1P14854 86 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 ACADSP16219 412 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 SLC6A6P31641 620 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 CSNK1A1P48729 337 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 ERVK-25P63136 954 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 ROR2Q01974 943 aaKnown RBP17.02■□□□□ 0.32
UPF1-209ENST00000600310 COX10Q12887 443 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 TOP3AQ13472 1001 aaPredicted RBP17.02■□□□□ 0.32
UPF1-209ENST00000600310 FAM205BPQ63HN1 556 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 ANKRD34AQ69YU3 496 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 HMBOX1Q6NT76 420 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 RPL13AP3Q6NVV1 102 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 HS3ST5Q8IZT8 346 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms