RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 SGCDQ92629 289 aa13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 ZNF845Q96IR2 970 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 NMNAT3Q96T66 252 aa13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 SF3B5Q9BWJ5 86 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 PRDM14Q9GZV8 571 aa13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 TSPAN10Q9H1Z9 355 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 EXO5Q9H790 373 aa13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 MED20Q9H944 212 aa13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 AMBNQ9NP70 447 aa13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 TIGARQ9NQ88 270 aa13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 ZNF71Q9NQZ8 489 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 PAQR5Q9NXK6 330 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 VSX1Q9NZR4 365 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 KLHL13Q9P2N7 655 aa13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 RPL36Q9Y3U8 105 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 NCOA6Q14686 2063 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-211ENST00000595945 IGHV3-15A0A0B4J1V0 119 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 ZNF716A6NP11 495 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 NPIPA5E9PKD4 350 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 CYTIPO60759 359 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 MRPS14O60783 128 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 SERPINI2O75830 405 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 BCL10O95999 233 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 DBTP11182 482 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 PAICSP22234 425 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 HTR1FP30939 366 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 SLC16A1P53985 500 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 CDH11P55287 796 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 MELKQ14680 651 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 LEG1Q6P5S2 330 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 MEPCEQ7L2J0 689 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 GID4Q8IVV7 300 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 ZIC4Q8N9L1 334 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 TSPAN14Q8NG11 270 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 OR9K2Q8NGE7 335 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 ROBO4Q8WZ75 1007 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 KISS1RQ969F8 398 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 RFKQ969G6 155 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 KCNK17Q96T54 332 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 CNOT2Q9NZN8 540 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 NPIPA1Q9UND3 350 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 CACNA1CQ13936 2221 aa13.14□□□□□ -0.31
SHKBP1-211ENST00000595945 PRSS37A4D1T9 235 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 EFCAB10A6NFE3 127 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 EIF4E1BA6NMX2 242 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 SNTNA6NMZ2 147 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 M0R3G1 203 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 ARHGEF9O43307 516 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 ZNF43P17038 809 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 TUBA4AP68366 448 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 SRYQ05066 204 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 RUNX1T1Q06455 604 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 C1DQ13901 141 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 C3AR1Q16581 482 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 ZNF773Q6PK81 442 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 CREB3L2Q70SY1 520 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 FCRLAQ7L513 359 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 ADGRE4PQ86SQ3 457 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 ZNF540Q8NDQ6 660 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 OR9Q1Q8NGQ5 310 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 OR6X1Q8NH79 312 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 NMD3Q96D46 503 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 GPR137Q96N19 417 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 ARHGAP9Q9BRR9 750 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 MRPL13Q9BYD1 178 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 CCNB1IP1Q9NPC3 277 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 MED29Q9NX70 200 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 LUZP4Q9P127 313 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 ERVK-18Q9QC07 812 aa13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 WARS2Q9UGM6 360 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 ING1Q9UK53 422 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 INTS1Q8N201 2190 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-211ENST00000595945 IGKV3D-15A0A087WSY6 115 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 A0A087WXM4 84 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 SLC22A23A1A5C7 686 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 CENPBD1B2RD01 187 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 PTGES3LE9PB15 166 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 H7C1C5 153 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 XKRYO14609 159 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 AHCYL1O43865 530 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 TRMUO75648 421 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 RENP00797 406 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 CDK1P06493 297 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 ADRA2AP08913 450 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 CLUP10909 449 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 SPI1P17947 270 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 BIDP55957 195 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 LCN6P62502 163 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 PIGFQ07326 219 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 SLC35D3Q5M8T2 416 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 AHSA2Q719I0 299 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 HDDC2Q7Z4H3 204 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 FGD2Q7Z6J4 655 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 GPAT4Q86UL3 456 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 RNF128Q8TEB7 428 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 ZNRF4Q8WWF5 429 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 MYDGFQ969H8 173 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 LGALS12Q96DT0 336 aa13.12□□□□□ -0.31
SHKBP1-211ENST00000595945 RNFT2Q96EX2 444 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms