RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TUBA1BP68363 451 aa13.18□□□□□ -0.3
TRIM28-205ENST00000595028 TUBA4AP68366 448 aa13.18□□□□□ -0.3
TRIM28-205ENST00000595028 PHYHD1Q5SRE7 291 aa13.18□□□□□ -0.3
TRIM28-205ENST00000595028 TUBA1AQ71U36 451 aa13.18□□□□□ -0.3
TRIM28-205ENST00000595028 DEPDC4Q8N2C3 294 aa13.18□□□□□ -0.3
TRIM28-205ENST00000595028 LRRC17Q8N6Y2 441 aa13.18□□□□□ -0.3
TRIM28-205ENST00000595028 PFN4Q8NHR9 129 aa13.18□□□□□ -0.3
TRIM28-205ENST00000595028 GTPBP3Q969Y2 492 aaKnown RBP13.18□□□□□ -0.3
TRIM28-205ENST00000595028 ZNF837Q96EG3 531 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-205ENST00000595028 LRR1Q96L50 414 aa13.18□□□□□ -0.3
TRIM28-205ENST00000595028 SLC38A2Q96QD8 506 aa13.18□□□□□ -0.3
TRIM28-205ENST00000595028 DHRS9Q9BPW9 319 aa13.18□□□□□ -0.3
TRIM28-205ENST00000595028 GRIP2Q9C0E4 1043 aa13.18□□□□□ -0.3
TRIM28-205ENST00000595028 CRNNQ9UBG3 495 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-205ENST00000595028 IGHV1-18A0A0C4DH31 117 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 ZNF726A6NNF4 738 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 ZNF99A8MXY4 864 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-205ENST00000595028 ATP6V1G2-DDX39BF2Z307 99 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 GSTA4O15217 222 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 SEC14L2O76054 403 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 HOXB1P14653 301 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-205ENST00000595028 IFNGR1P15260 489 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 CDKN1AP38936 164 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 BIDP55957 195 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 PSME3P61289 254 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 ZP4Q12836 540 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 CAMK2DQ13557 499 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 VTCN1Q7Z7D3 282 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 TMEM239Q8WW34 195 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 GEMIN6Q8WXD5 167 aaKnown RBP13.17□□□□□ -0.3
TRIM28-205ENST00000595028 ADAD1Q96M93 576 aaKnown RBP13.17□□□□□ -0.3
TRIM28-205ENST00000595028 KCTD14Q9BQ13 255 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-205ENST00000595028 MOV10Q9HCE1 1003 aaKnown RBP13.17□□□□□ -0.3
TRIM28-205ENST00000595028 SPAG4Q9NPE6 437 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 B3GAT2Q9NPZ5 323 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 C20orf141Q9NUB4 165 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 TAS2R5Q9NYW4 299 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 A4GNTQ9UNA3 340 aa13.17□□□□□ -0.3
TRIM28-205ENST00000595028 RNF13O43567 381 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 OR7A10O76100 309 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 ZNF682O95780 498 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 LY6G6DO95868 133 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 IGLV1-44P01699 117 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 CD8AP01732 235 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 HIST1H2ABP04908 130 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 IFNW1P05000 195 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 PCSK6P29122 969 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 TTKP33981 857 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 CSNK1A1P48729 337 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 ST3GAL3Q11203 375 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 C3orf36Q3SXR2 165 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 IFI44LQ53G44 452 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 AGAP6Q5VW22 663 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 ZNF544Q6NX49 715 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 CBLL1Q75N03 491 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 SLC35D2Q76EJ3 337 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 HIST3H2AQ7L7L0 130 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 OFCC1Q8IZS5 231 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 FAM169BQ8N8A8 192 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 OR6N1Q8NGY5 312 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 OR6X1Q8NH79 312 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 HIST1H2ACQ93077 130 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 SGTBQ96EQ0 304 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 TRMT61AQ96FX7 289 aaKnown RBP13.16□□□□□ -0.3
TRIM28-205ENST00000595028 HSH2DQ96JZ2 352 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 COX4I2Q96KJ9 171 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 HS6ST2Q96MM7 605 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 ULBP2Q9BZM5 246 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 MED31Q9Y3C7 131 aa13.16□□□□□ -0.3
TRIM28-205ENST00000595028 ZNF503-AS2A6NEH8 195 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 TRIM64A6NGJ6 449 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 TRIM64BA6NI03 449 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 H7C1Q1 480 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 PIP5K1CO60331 668 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 SERPINA1P01009 418 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 IGKV3-15P01624 115 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 CECR9P0C854 216 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 IFNA8P32881 189 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 NAAAQ02083 359 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 RPL18Q07020 188 aaKnown RBP13.15□□□□□ -0.3
TRIM28-205ENST00000595028 MELKQ14680 651 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 ETFDHQ16134 617 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 C11orf71Q6IPW1 123 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 ZNF627Q7L945 461 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 FBXL14Q8N1E6 418 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 MUC15Q8N387 334 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 LIPHQ8WWY8 451 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 TMEM54Q969K7 222 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 FAM162AQ96A26 154 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 KATNB1Q9BVA0 655 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 SEC61A2Q9H9S3 476 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 MAN2C1Q9NTJ4 1040 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 CBLN4Q9NTU7 201 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 MOKQ9UQ07 419 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 ARL2BPQ9Y2Y0 163 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 SNX13Q9Y5W8 968 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 ATP23Q9Y6H3 246 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 ARFGEF3Q5TH69 2177 aa13.15□□□□□ -0.3
TRIM28-205ENST00000595028 HIVEP2P31629 2446 aa13.14□□□□□ -0.31
TRIM28-205ENST00000595028 FAM171A2A8MVW0 826 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms