RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 EFCAB9A8MZ26 197 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 CLOCKO15516 846 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 BCL10O95999 233 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 RAF1P04049 648 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 FABP3P05413 133 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 CD3EP07766 207 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 DNASE1P24855 282 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 GPR4P46093 362 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 CSNK1A1P48729 337 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 ZNF83P51522 516 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 IST1P53990 364 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 SPIBQ01892 262 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 DNAL1Q4LDG9 190 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 C1QTNF12Q5T7M4 302 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 ANKRD16Q6P6B7 361 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 RRM2BQ7LG56 351 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 ZDHHC21Q8IVQ6 265 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 OR6N1Q8NGY5 312 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 MAGEE2Q8TD90 523 aaPredicted RBP12.75□□□□□ -0.37
VRK3-206ENST00000594090 BCL2L2Q92843 193 aaPredicted RBP12.75□□□□□ -0.37
VRK3-206ENST00000594090 SLC7A6OSQ96CW6 309 aaPredicted RBP12.75□□□□□ -0.37
VRK3-206ENST00000594090 ASB9Q96DX5 294 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 ZNF837Q96EG3 531 aaPredicted RBP12.75□□□□□ -0.37
VRK3-206ENST00000594090 SLC25A44Q96H78 314 aaPredicted RBP12.75□□□□□ -0.37
VRK3-206ENST00000594090 FUZQ9BT04 418 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 ULBP2Q9BZM5 246 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 OBP2BQ9NPH6 170 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 CCM2LQ9NUG4 571 aaPredicted RBP12.75□□□□□ -0.37
VRK3-206ENST00000594090 EDARQ9UNE0 448 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 TMEM5Q9Y2B1 443 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 TACC2O95359 2948 aa12.75□□□□□ -0.37
VRK3-206ENST00000594090 TRAV27A0A087WT01 109 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 A0A096LPE4 126 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 TRBV4-1A0A0J9YWV2 114 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 A0A1W2PPZ6 126 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 ZNF99A8MXY4 864 aaPredicted RBP12.74□□□□□ -0.37
VRK3-206ENST00000594090 GYG2O15488 501 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 GADD45GO95257 159 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 ATE1O95260 518 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 PGA4P0DJD7 388 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 PGA3P0DJD8 388 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 SLC9A3P48764 834 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 DAP3P51398 398 aaKnown RBP12.74□□□□□ -0.37
VRK3-206ENST00000594090 PRPS1P60891 318 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 ARF1P84077 181 aaKnown RBP12.74□□□□□ -0.37
VRK3-206ENST00000594090 MS4A2Q01362 244 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 FHL1Q13642 323 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 KEAP1Q14145 624 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 LAPTM4AQ15012 233 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 SEC23BQ15437 767 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 ALG10Q5BKT4 473 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 KLHL17Q6TDP4 642 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 TMPRSS11FQ6ZWK6 438 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 HDDC2Q7Z4H3 204 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 OAFQ86UD1 273 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 CDK20Q8IZL9 346 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 OR13C2Q8NGS9 318 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 ASB10Q8WXI3 467 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 TMEM54Q969K7 222 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 ZNF566Q969W8 418 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 FAM46AQ96IP4 442 aaKnown RBP12.74□□□□□ -0.37
VRK3-206ENST00000594090 ITGB1BP2Q9UKP3 347 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 MAGED1Q9Y5V3 778 aaPredicted RBP12.74□□□□□ -0.37
VRK3-206ENST00000594090 TEX15Q9BXT5 2789 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 ABCA4P78363 2273 aa12.74□□□□□ -0.37
VRK3-206ENST00000594090 ARPC4-TTLL3A0A0A6YYG9 625 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 NPIPB13A6NJU9 1138 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 NPIPB4C9JG80 1138 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 MCIDASD6RGH6 385 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 M0R1B8 84 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 CDC42EP2O14613 210 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 HS3ST1O14792 307 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 SEC14L2O76054 403 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 WNT11O96014 354 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 IGHG1P01857 330 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 CD53P19397 219 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 OMPP47874 163 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 SMIM11AP58511 58 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 UBE2NP61088 152 aaKnown RBP12.73□□□□□ -0.37
VRK3-206ENST00000594090 BNIP1Q12981 228 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 ACKR1Q16570 336 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 ANKDD1AQ495B1 522 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 ADAM5Q6NVV9 412 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 TMEM108Q6UXF1 575 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 PIWIL3Q7Z3Z3 882 aaKnown RBP12.73□□□□□ -0.37
VRK3-206ENST00000594090 NOXO1Q8NFA2 376 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 KBTBD8Q8NFY9 601 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 OR4K5Q8NGD3 323 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 OR52J3Q8NH60 311 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 OR51A7Q8NH64 312 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 LILRB1Q8NHL6 650 aaPredicted RBP12.73□□□□□ -0.37
VRK3-206ENST00000594090 AKAP1Q92667 903 aaKnown RBP eCLIP12.73□□□□□ -0.37
VRK3-206ENST00000594090 ZNF347Q96SE7 839 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 SEPHS2Q99611 448 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 C1QTNF6Q9BXI9 259 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 MAGIXQ9H6Y5 334 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 GLTPQ9NZD2 209 aa12.73□□□□□ -0.37
VRK3-206ENST00000594090 SH3PXD2BA1X283 911 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 ABCD4O14678 606 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 ACOT8O14734 319 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms