RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ULBP2Q9BZM5 246 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 ABCD2Q9UBJ2 740 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 NF1P21359 2839 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 ALPK2Q86TB3 2170 aa20.85■□□□□ 0.93
SHMT1-206ENST00000579558 IGHV1-18A0A0C4DH31 117 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 ATP6V1G2-DDX39BF2Z307 99 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 SEC14L2O76054 403 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 OR7A10O76100 309 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 CD8AP01732 235 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 IFNW1P05000 195 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 FABP6P51161 128 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 ST3GAL3Q11203 375 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 CBLL1Q75N03 491 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 FBXL14Q8N1E6 418 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 GEMIN6Q8WXD5 167 aaKnown RBP20.84■□□□□ 0.93
SHMT1-206ENST00000579558 FAM162AQ96A26 154 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 ADAD1Q96M93 576 aaKnown RBP20.84■□□□□ 0.93
SHMT1-206ENST00000579558 KCNS3Q9BQ31 491 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 MOV10Q9HCE1 1003 aaKnown RBP20.84■□□□□ 0.93
SHMT1-206ENST00000579558 A4GNTQ9UNA3 340 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 MOKQ9UQ07 419 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 ARL2BPQ9Y2Y0 163 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 MED31Q9Y3C7 131 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 PLCE1Q9P212 2302 aa20.84■□□□□ 0.93
SHMT1-206ENST00000579558 BLOC1S5-TXNDC5H3BN57 136 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 SERPINA1P01009 418 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 IGF2P01344 180 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 NCK1P16333 377 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 FUT1P19526 365 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 TTKP33981 857 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 YAP1P46937 504 aaKnown RBP20.83■□□□□ 0.93
SHMT1-206ENST00000579558 CSNK1A1P48729 337 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 MELKQ14680 651 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 IFI44LQ53G44 452 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 FKBP9P1Q75LS8 142 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 OR6X1Q8NH79 312 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 GRIP2Q9C0E4 1043 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 SPAG4Q9NPE6 437 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 C20orf141Q9NUB4 165 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 CRNNQ9UBG3 495 aaPredicted RBP20.83■□□□□ 0.93
SHMT1-206ENST00000579558 POFUT2Q9Y2G5 429 aa20.83■□□□□ 0.93
SHMT1-206ENST00000579558 CAPZA2P47755 286 aa20.82■□□□□ 0.92
SHMT1-206ENST00000579558 RPL18Q07020 188 aaKnown RBP20.82■□□□□ 0.92
SHMT1-206ENST00000579558 C3orf36Q3SXR2 165 aa20.82■□□□□ 0.92
SHMT1-206ENST00000579558 ZNF544Q6NX49 715 aa20.82■□□□□ 0.92
SHMT1-206ENST00000579558 MUC15Q8N387 334 aa20.82■□□□□ 0.92
SHMT1-206ENST00000579558 HSH2DQ96JZ2 352 aa20.82■□□□□ 0.92
SHMT1-206ENST00000579558 BDH2Q9BUT1 245 aa20.82■□□□□ 0.92
SHMT1-206ENST00000579558 KATNB1Q9BVA0 655 aa20.82■□□□□ 0.92
SHMT1-206ENST00000579558 FNDC11Q9BVV2 318 aa20.82■□□□□ 0.92
SHMT1-206ENST00000579558 CBLN4Q9NTU7 201 aa20.82■□□□□ 0.92
SHMT1-206ENST00000579558 ADA2Q9NZK5 511 aa20.82■□□□□ 0.92
SHMT1-206ENST00000579558 SNX13Q9Y5W8 968 aa20.82■□□□□ 0.92
SHMT1-206ENST00000579558 TRIM64A6NGJ6 449 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 TRIM64BA6NI03 449 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 H7C1Q1 480 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 J3KTA2 159 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 PIP5K1CO60331 668 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 INHBBP09529 407 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 CECR9P0C854 216 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 ZNF813Q6ZN06 617 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 PIGWQ7Z7B1 504 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 CCDC36Q8IYA8 594 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 OFCC1Q8IZS5 231 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 FAM169BQ8N8A8 192 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 ZNF566Q969W8 418 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 GSX1Q9H4S2 264 aaPredicted RBP20.81■□□□□ 0.92
SHMT1-206ENST00000579558 RHCGQ9UBD6 479 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 EGFL7Q9UHF1 273 aa20.81■□□□□ 0.92
SHMT1-206ENST00000579558 BCL10O95999 233 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 IGLV1-44P01699 117 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 CRYAAP02489 173 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 F13BP05160 661 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 CBR1P16152 277 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 C11orf71Q6IPW1 123 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 BIVMQ86UB2 503 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 LIPHQ8WWY8 451 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 TMEM54Q969K7 222 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 SLC25A44Q96H78 314 aaPredicted RBP20.8■□□□□ 0.92
SHMT1-206ENST00000579558 LRRC37BQ96QE4 947 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 GLTPQ9NZD2 209 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 RPS6KA6Q9UK32 745 aa20.8■□□□□ 0.92
SHMT1-206ENST00000579558 A0A1W2PRG6 482 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 ZNF503-AS2A6NEH8 195 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 DYNC1I1O14576 645 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 DCTN3O75935 186 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 IGKV3-15P01624 115 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 IFI30P13284 250 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 B4GALT1P15291 398 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 AQP2P41181 271 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 IDH3GP51553 393 aaPredicted RBP20.79■□□□□ 0.92
SHMT1-206ENST00000579558 NAAAQ02083 359 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 TRAM2Q15035 370 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 MDP1Q86V88 176 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 CIARTQ8N365 385 aaPredicted RBP20.79■□□□□ 0.92
SHMT1-206ENST00000579558 RNF148Q8N7C7 305 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 COX4I2Q96KJ9 171 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 FOXB1Q99853 325 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 CACNG6Q9BXT2 260 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 SEC61A2Q9H9S3 476 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms