RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 ZNF730Q6ZMV8 503 aa16.92■□□□□ 0.3
SS18-208ENST00000577751 TMPRSS11FQ6ZWK6 438 aa16.92■□□□□ 0.3
SS18-208ENST00000577751 LILRB1Q8NHL6 650 aaPredicted RBP16.92■□□□□ 0.3
SS18-208ENST00000577751 MOSPD2Q8NHP6 518 aa16.92■□□□□ 0.3
SS18-208ENST00000577751 TMEM54Q969K7 222 aa16.92■□□□□ 0.3
SS18-208ENST00000577751 MBD6Q96DN6 1003 aa16.92■□□□□ 0.3
SS18-208ENST00000577751 SLC25A44Q96H78 314 aaPredicted RBP16.92■□□□□ 0.3
SS18-208ENST00000577751 PIP5K1AQ99755 562 aa16.92■□□□□ 0.3
SS18-208ENST00000577751 FUZQ9BT04 418 aa16.92■□□□□ 0.3
SS18-208ENST00000577751 IL1RAPQ9NPH3 570 aa16.92■□□□□ 0.3
SS18-208ENST00000577751 OBP2BQ9NPH6 170 aa16.92■□□□□ 0.3
SS18-208ENST00000577751 CCM2LQ9NUG4 571 aaPredicted RBP16.92■□□□□ 0.3
SS18-208ENST00000577751 M0R3G1 203 aa16.91■□□□□ 0.3
SS18-208ENST00000577751 PDE5AO76074 875 aa16.91■□□□□ 0.3
SS18-208ENST00000577751 BCL10O95999 233 aa16.91■□□□□ 0.3
SS18-208ENST00000577751 HOXB1P14653 301 aaPredicted RBP16.91■□□□□ 0.3
SS18-208ENST00000577751 DNASE1P24855 282 aa16.91■□□□□ 0.3
SS18-208ENST00000577751 PRPS1P60891 318 aa16.91■□□□□ 0.3
SS18-208ENST00000577751 ARF1P84077 181 aaKnown RBP16.91■□□□□ 0.3
SS18-208ENST00000577751 TESK1Q15569 626 aa16.91■□□□□ 0.3
SS18-208ENST00000577751 ANKDD1AQ495B1 522 aa16.91■□□□□ 0.3
SS18-208ENST00000577751 MTX3Q5HYI7 312 aa16.91■□□□□ 0.3
SS18-208ENST00000577751 CYP2R1Q6VVX0 501 aa16.91■□□□□ 0.3
SS18-208ENST00000577751 SLC7A6OSQ96CW6 309 aaPredicted RBP16.91■□□□□ 0.3
SS18-208ENST00000577751 INIPQ9NRY2 104 aa16.91■□□□□ 0.3
SS18-208ENST00000577751 RNF115Q9Y4L5 304 aa16.91■□□□□ 0.3
SS18-208ENST00000577751 MYO9AB2RTY4 2548 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 ARPC4-TTLL3A0A0A6YYG9 625 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 TCRBV5S2A0A599 114 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 NPIPB13A6NJU9 1138 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 ZNF99A8MXY4 864 aaPredicted RBP16.9■□□□□ 0.3
SS18-208ENST00000577751 NPIPB4C9JG80 1138 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 CLOCKO15516 846 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 CD53P19397 219 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 PAX7P23759 505 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 PTAFRP25105 342 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 SLC9A3P48764 834 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 KEAP1Q14145 624 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 MELKQ14680 651 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 ZNF627Q7L945 461 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 RRM2BQ7LG56 351 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 PIWIL3Q7Z3Z3 882 aaKnown RBP16.9■□□□□ 0.3
SS18-208ENST00000577751 DHFR2Q86XF0 187 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 MEX3DQ86XN8 651 aaKnown RBP16.9■□□□□ 0.3
SS18-208ENST00000577751 CDK20Q8IZL9 346 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 OR6N1Q8NGY5 312 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 MCUR1Q96AQ8 359 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 SEPHS2Q99611 448 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 THTPAQ9BU02 230 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 UBTD1Q9HAC8 227 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 B3GAT2Q9NPZ5 323 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 ITGB1BP2Q9UKP3 347 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 MAGED1Q9Y5V3 778 aaPredicted RBP16.9■□□□□ 0.3
SS18-208ENST00000577751 CADP27708 2225 aa16.9■□□□□ 0.3
SS18-208ENST00000577751 TRBV4-1A0A0J9YWV2 114 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 A0A1W2PRG6 482 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 EFCAB9A8MZ26 197 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 CDC42EP2O14613 210 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 WNT11O96014 354 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 FABP3P05413 133 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 PGA4P0DJD7 388 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 PGA3P0DJD8 388 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 SAGP10523 405 aaPredicted RBP16.89■□□□□ 0.29
SS18-208ENST00000577751 CD40P25942 277 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 HOXC12P31275 282 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 CSNK1A1P48729 337 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 ZNF83P51522 516 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 HIST3H3Q16695 136 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 ALG10Q5BKT4 473 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 ARMC4Q5T2S8 1044 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 PGM2L1Q6PCE3 622 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 KLHL17Q6TDP4 642 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 KLHL24Q6TFL4 600 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 TMEM108Q6UXF1 575 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 C20orf204Q6ZNR8 217 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 OAFQ86UD1 273 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 LRRC75AQ8NAA5 344 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 ASB10Q8WXI3 467 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 ZNF566Q969W8 418 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 ASB9Q96DX5 294 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 CLPTM1LQ96KA5 538 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 TNFRSF13CQ96RJ3 184 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 FOXC2Q99958 501 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 C1QTNF6Q9BXI9 259 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 MRPL13Q9BYD1 178 aaKnown RBP16.89■□□□□ 0.29
SS18-208ENST00000577751 ULBP2Q9BZM5 246 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 GLTPQ9NZD2 209 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 DSCAMO60469 2012 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 OTOGQ6ZRI0 2925 aa16.89■□□□□ 0.29
SS18-208ENST00000577751 ROS1P08922 2347 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 CCDC168Q8NDH2 2452 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 A0A096LPE4 126 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 A0A1W2PPZ6 126 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 CENPBD1B2RD01 187 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 ACOT8O14734 319 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 HS3ST1O14792 307 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 GADD45GO95257 159 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 GPR4P46093 362 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 OMPP47874 163 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 LIMS1P48059 325 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms