RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 NR2C1P13056 603 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 CD79BP40259 229 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 TSPAN31Q12999 210 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 KPNB1Q14974 876 aaKnown RBP18.2■□□□□ 0.5
VPS53-210ENST00000571456 ATP6AP1Q15904 470 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 ALG10Q5BKT4 473 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 FAM205BPQ63HN1 556 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 ZER1Q7Z7L7 766 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 LUZP2Q86TE4 346 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 TMEM200AQ86VY9 491 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 ZNF610Q8N9Z0 462 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 NRGNQ92686 78 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 LRR1Q96L50 414 aa18.2■□□□□ 0.5
VPS53-210ENST00000571456 ZNF385AQ96PM9 386 aaKnown RBP18.2■□□□□ 0.5
VPS53-210ENST00000571456 OPN3Q9H1Y3 402 aaPredicted RBP18.2■□□□□ 0.5
VPS53-210ENST00000571456 NKX2-6A6NCS4 301 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 UNC119BA6NIH7 251 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 ZNF726A6NNF4 738 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 SLC43A1O75387 559 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 ZNF432O94892 652 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 NDUFB2O95178 105 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 HPRP00739 348 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 GPR4P46093 362 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 GSSP48637 474 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 CLDN17P56750 224 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 COX10Q12887 443 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 ZNF770Q6IQ21 691 aaPredicted RBP18.19■□□□□ 0.5
VPS53-210ENST00000571456 NHLRC1Q6VVB1 395 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 SLC35D2Q76EJ3 337 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 KDM8Q8N371 416 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 OR6X1Q8NH79 312 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 GIPC3Q8TF64 312 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 DNAJC9Q8WXX5 260 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 DGCR6LQ9BY27 220 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 DENND2DQ9H6A0 471 aaPredicted RBP18.19■□□□□ 0.5
VPS53-210ENST00000571456 UPB1Q9UBR1 384 aa18.19■□□□□ 0.5
VPS53-210ENST00000571456 C11orf98E9PRG8 122 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 CDC42EP2O14613 210 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 PTP4A3O75365 173 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 BCL10O95999 233 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 ADAP00813 363 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 IGHMP01871 453 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 POU2F1P14859 743 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 PPP3CBP16298 524 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 IGFBP2P18065 325 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 PSMB1P20618 241 aaKnown RBP18.18■□□□□ 0.5
VPS53-210ENST00000571456 AQP2P41181 271 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 LSM11P83369 360 aaKnown RBP eCLIP18.18■□□□□ 0.5
VPS53-210ENST00000571456 STK11Q15831 433 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 PGBD2Q6P3X8 592 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 ZNF474Q6S9Z5 364 aaPredicted RBP18.18■□□□□ 0.5
VPS53-210ENST00000571456 GABRG1Q8N1C3 465 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 OR10G2Q8NGC3 310 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 OR51A7Q8NH64 312 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 FNDC8Q8TC99 324 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 NINJ1Q92982 152 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 ZNF775Q96BV0 537 aaPredicted RBP18.18■□□□□ 0.5
VPS53-210ENST00000571456 GPX7Q96SL4 187 aaPredicted RBP18.18■□□□□ 0.5
VPS53-210ENST00000571456 OSBPL10Q9BXB5 764 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 TXNIPQ9H3M7 391 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 B3GAT2Q9NPZ5 323 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 ASB6Q9NWX5 421 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 GALNT8Q9NY28 637 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 SIGLEC7Q9Y286 467 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 GPR52Q9Y2T5 361 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 U3KQV3 271 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 ATRQ13535 2644 aa18.18■□□□□ 0.5
VPS53-210ENST00000571456 TIPRLO75663 272 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 ANXA8P13928 327 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 IFNGR1P15260 489 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 TGFBR3Q03167 851 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 ITGADQ13349 1161 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 NIPAL3Q6P499 406 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 SHQ1Q6PI26 577 aaKnown RBP18.17■□□□□ 0.5
VPS53-210ENST00000571456 SMARCD3Q6STE5 483 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 CD300LDQ6UXZ3 194 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 HIPK1Q86Z02 1210 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 UBE2J2Q8N2K1 259 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 CLDN22Q8N7P3 220 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 OR13C2Q8NGS9 318 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 SLC25A44Q96H78 314 aaPredicted RBP18.17■□□□□ 0.5
VPS53-210ENST00000571456 TNFRSF13CQ96RJ3 184 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 ALPK2Q86TB3 2170 aa18.17■□□□□ 0.5
VPS53-210ENST00000571456 TRAV27A0A087WT01 109 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 A6NIZ1 184 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 MCIDASD6RGH6 385 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 C16orf97H3BN30 126 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 KRT33AO76009 404 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 APEHP13798 732 aaKnown RBP18.16■□□□□ 0.5
VPS53-210ENST00000571456 ERFP50548 548 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 SH3BGRP55822 239 aaPredicted RBP18.16■□□□□ 0.5
VPS53-210ENST00000571456 RAP1BP61224 184 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 RAP1AP62834 184 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 GPR139Q6DWJ6 353 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 DPY19L2P2Q6ZN68 376 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 SVOPLQ8N434 492 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 STEAP2Q8NFT2 490 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 OR5K1Q8NHB7 308 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 STMN2Q93045 179 aa18.16■□□□□ 0.5
VPS53-210ENST00000571456 CENPNQ96H22 339 aaPredicted RBP18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms