RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 TPD52L3Q96J77 140 aa17.67■□□□□ 0.42
CLK3-225ENST00000569063 BARX1Q9HBU1 254 aaPredicted RBP17.67■□□□□ 0.42
CLK3-225ENST00000569063 GDF2Q9UK05 429 aaPredicted RBP17.67■□□□□ 0.42
CLK3-225ENST00000569063 NME4O00746 187 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 RNF13O43567 381 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 NDUFS7O75251 213 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 SERPINI2O75830 405 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 CRYAAP02489 173 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 HEXAP06865 529 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 CECR9P0C854 216 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 BIDP55957 195 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 DNM1P46Q6ZS02 220 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 OR6N1Q8NGY5 312 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 TMEM255BQ8WV15 326 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 TMEM239Q8WW34 195 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 CMTM5Q96DZ9 223 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 HS6ST2Q96MM7 605 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 KCNS3Q9BQ31 491 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 CACNG6Q9BXT2 260 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 ULBP2Q9BZM5 246 aa17.66■□□□□ 0.42
CLK3-225ENST00000569063 GMPR2Q9P2T1 348 aaKnown RBP17.66■□□□□ 0.42
CLK3-225ENST00000569063 NF1P21359 2839 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 ZNF503-AS2A6NEH8 195 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 NDUFAB1O14561 156 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 SMAD7O15105 426 aaKnown RBP17.65■□□□□ 0.42
CLK3-225ENST00000569063 LY6G6DO95868 133 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 UMPSP11172 480 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 ARR3P36575 388 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 ACVR1BP36896 505 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 NUDT2P50583 147 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 SLC7A2P52569 658 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 UGT2B15P54855 530 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 NAAAQ02083 359 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 PFN4Q8NHR9 129 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 LIPHQ8WWY8 451 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 TMEM54Q969K7 222 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 A4GNTQ9UNA3 340 aa17.65■□□□□ 0.42
CLK3-225ENST00000569063 ZFHX3Q15911 3703 aa17.64■□□□□ 0.42
CLK3-225ENST00000569063 H7C417 338 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 CXCR6O00574 342 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 SNX3O60493 162 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 OR7A10O76100 309 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 BMP4P12644 408 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 HOXB4P17483 251 aaPredicted RBP17.64■□□□□ 0.41
CLK3-225ENST00000569063 FUT1P19526 365 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 DRD4P21917 467 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 LSP1P33241 339 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 CSNK1A1P48729 337 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 CHRNB3Q05901 458 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 ST3GAL3Q11203 375 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 NANOGNBQ7Z5D8 188 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 SGTBQ96EQ0 304 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 SLC25A44Q96H78 314 aaPredicted RBP17.64■□□□□ 0.41
CLK3-225ENST00000569063 PRRC1Q96M27 445 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 C20orf141Q9NUB4 165 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 B3GNT2Q9NY97 397 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 GLTPQ9NZD2 209 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 POFUT2Q9Y2G5 429 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 MED31Q9Y3C7 131 aa17.64■□□□□ 0.41
CLK3-225ENST00000569063 HTR3EA5X5Y0 456 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 GMNCA6NCL1 334 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 BLOC1S5-TXNDC5H3BN57 136 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 SEC14L2O76054 403 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 TSPAN19P0C672 248 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 PRDX6P30041 224 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 CALCRP30988 508 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 GSK3BP49841 420 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 RPL18Q07020 188 aaKnown RBP17.63■□□□□ 0.41
CLK3-225ENST00000569063 MST1LQ2TV78 715 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 ZNF813Q6ZN06 617 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 Q71RC1 249 aaPredicted RBP17.63■□□□□ 0.41
CLK3-225ENST00000569063 CBLL1Q75N03 491 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 VTCN1Q7Z7D3 282 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 MDP1Q86V88 176 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 OR4F15Q8NGB8 312 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 ZNF566Q969W8 418 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 POM121Q96HA1 1249 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 FOXB1Q99853 325 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 FAM107BQ9H098 131 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 NSRP1Q9H0G5 558 aaKnown RBP17.63■□□□□ 0.41
CLK3-225ENST00000569063 SEC61A2Q9H9S3 476 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 CA10Q9NS85 328 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 ABCD2Q9UBJ2 740 aa17.63■□□□□ 0.41
CLK3-225ENST00000569063 HEATR1Q9H583 2144 aaKnown RBP17.63■□□□□ 0.41
CLK3-225ENST00000569063 C2CD3Q4AC94 2353 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 SETD2Q9BYW2 2564 aaPredicted RBP17.62■□□□□ 0.41
CLK3-225ENST00000569063 GSTA4O15217 222 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 CELA3BP08861 270 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 PGA4P0DJD7 388 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 PGA3P0DJD8 388 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 IFNA8P32881 189 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 IDH3GP51553 393 aaPredicted RBP17.62■□□□□ 0.41
CLK3-225ENST00000569063 RAB35Q15286 201 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 SWI5Q1ZZU3 235 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 CPLX4Q7Z7G2 160 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 MYPOPQ86VE0 399 aaPredicted RBP17.62■□□□□ 0.41
CLK3-225ENST00000569063 NUP37Q8NFH4 326 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 IL17RDQ8NFM7 739 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 PMF1-BGLAPU3KQ54 211 aa17.62■□□□□ 0.41
CLK3-225ENST00000569063 A0A1W2PRG6 482 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms