RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ANKS4BQ8N8V4 417 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 FAM156AQ8NDB6 213 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 RBM15BQ8NDT2 890 aaKnown RBP13.12□□□□□ -0.31
VPS39-210ENST00000568357 MAGEE2Q8TD90 523 aaPredicted RBP13.12□□□□□ -0.31
VPS39-210ENST00000568357 HIST1H2ACQ93077 130 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 FAM162AQ96A26 154 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 SGTBQ96EQ0 304 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 HSH2DQ96JZ2 352 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 PRRC1Q96M27 445 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 GSX2Q9BZM3 304 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 OBP2BQ9NPH6 170 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 MAN2C1Q9NTJ4 1040 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 ZNF701Q9NV72 531 aaPredicted RBP13.12□□□□□ -0.31
VPS39-210ENST00000568357 TAGLN3Q9UI15 199 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 MGAT4BQ9UQ53 548 aa13.12□□□□□ -0.31
VPS39-210ENST00000568357 MAGED1Q9Y5V3 778 aaPredicted RBP13.12□□□□□ -0.31
VPS39-210ENST00000568357 ARPC4-TTLL3A0A0A6YYG9 625 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 OVOL3O00110 214 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 ARHGEF9O43307 516 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 PIP5K1CO60331 668 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 OR7A10O76100 309 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 IGF2P01344 180 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 AQP2P41181 271 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 PTH2RP49190 550 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 CDH11P55287 796 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 SH3BGRP55822 239 aaPredicted RBP13.11□□□□□ -0.31
VPS39-210ENST00000568357 UBE2NP61088 152 aaKnown RBP13.11□□□□□ -0.31
VPS39-210ENST00000568357 RPL18Q07020 188 aaKnown RBP13.11□□□□□ -0.31
VPS39-210ENST00000568357 Q5PR19 223 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 B3GLCTQ6Y288 498 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 FKBP9P1Q75LS8 142 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 BIVMQ86UB2 503 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 OR6X1Q8NH79 312 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 LIPHQ8WWY8 451 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 GEMIN6Q8WXD5 167 aaKnown RBP13.11□□□□□ -0.31
VPS39-210ENST00000568357 CXorf56Q9H5V9 222 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 MED31Q9Y3C7 131 aa13.11□□□□□ -0.31
VPS39-210ENST00000568357 IGHV1-18A0A0C4DH31 117 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 ZNF503-AS2A6NEH8 195 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 ZNF99A8MXY4 864 aaPredicted RBP13.1□□□□□ -0.31
VPS39-210ENST00000568357 DCTN3O75935 186 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 SEC14L2O76054 403 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 PRSS23O95084 383 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 F13BP05160 661 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 HOXB1P14653 301 aaPredicted RBP13.1□□□□□ -0.31
VPS39-210ENST00000568357 MSX2P35548 267 aaPredicted RBP13.1□□□□□ -0.31
VPS39-210ENST00000568357 RPS4XP62701 263 aaKnown RBP13.1□□□□□ -0.31
VPS39-210ENST00000568357 MELKQ14680 651 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 LAPTM4AQ15012 233 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 CXXC5Q7LFL8 322 aaKnown RBP13.1□□□□□ -0.31
VPS39-210ENST00000568357 NANOGNBQ7Z5D8 188 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 MEX3DQ86XN8 651 aaKnown RBP13.1□□□□□ -0.31
VPS39-210ENST00000568357 FITM2Q8N6M3 262 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 OR6N1Q8NGY5 312 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 MOSPD2Q8NHP6 518 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 TMEM54Q969K7 222 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 CDRT15Q96T59 188 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 FNDC11Q9BVV2 318 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 DCAF13Q9NV06 445 aaKnown RBP13.1□□□□□ -0.31
VPS39-210ENST00000568357 FAM53CQ9NYF3 392 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 CRNNQ9UBG3 495 aaPredicted RBP13.1□□□□□ -0.31
VPS39-210ENST00000568357 CD300AQ9UGN4 299 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 POU2F3Q9UKI9 436 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 MOKQ9UQ07 419 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 RTTNQ86VV8 2226 aa13.1□□□□□ -0.31
VPS39-210ENST00000568357 CADP27708 2225 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 TMCC2O75069 709 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 TSPAN19P0C672 248 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 HSD17B1P14061 328 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 TCN1P20061 433 aaPredicted RBP13.09□□□□□ -0.31
VPS39-210ENST00000568357 IFNA8P32881 189 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 CDKN1AP38936 164 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 CSNK1A1P48729 337 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 RUNX1T1Q06455 604 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 FXNQ16595 210 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 LRFN4Q6PJG9 635 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 TBPL2Q6SJ96 375 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 PRSS57Q6UWY2 283 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 YTHDF3Q7Z739 585 aaKnown RBP13.09□□□□□ -0.31
VPS39-210ENST00000568357 OFCC1Q8IZS5 231 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 PGAM4Q8N0Y7 254 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 DEPDC4Q8N2C3 294 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 FAM86B1Q8N7N1 296 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 SPATA3Q8NHX4 192 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 BPIFA2Q96DR5 249 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 SLC25A44Q96H78 314 aaPredicted RBP13.09□□□□□ -0.31
VPS39-210ENST00000568357 ADAD1Q96M93 576 aaKnown RBP13.09□□□□□ -0.31
VPS39-210ENST00000568357 SLC38A2Q96QD8 506 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 DHRS9Q9BPW9 319 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 TRAF4Q9BUZ4 470 aaPredicted RBP13.09□□□□□ -0.31
VPS39-210ENST00000568357 ULBP2Q9BZM5 246 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 SEC61A2Q9H9S3 476 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 B3GAT2Q9NPZ5 323 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 GLTPQ9NZD2 209 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 RPS6KA6Q9UK32 745 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 ATP23Q9Y6H3 246 aa13.09□□□□□ -0.31
VPS39-210ENST00000568357 ATP6V1G2-DDX39BF2Z307 99 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 BCL10O95999 233 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 IGLV1-44P01699 117 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 CELA3BP08861 270 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms