RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CORINQ9Y5Q5 1042 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 LYVE1Q9Y5Y7 322 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 DSCAMO60469 2012 aa8.08□□□□□ -1.12
VPS35-206ENST00000565228 CCDC168Q8NDH2 2452 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.07□□□□□ -1.12
VPS35-206ENST00000565228 TCRBV3S1A0A5B6 114 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 BLOC1S5-TXNDC5H3BN57 136 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 RPL36A-HNRNPH2H7BZ11 118 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 VAMP5O95183 116 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 CNOT4O95628 575 aaKnown RBP8.07□□□□□ -1.12
VPS35-206ENST00000565228 SCG5P05408 212 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 FABP3P05413 133 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 PGA4P0DJD7 388 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 PGA3P0DJD8 388 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 UMPSP11172 480 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 AHCYP23526 432 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 HMGA2P52926 109 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 MYBPC1Q00872 1141 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 SPIBQ01892 262 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 ROR2Q01974 943 aaKnown RBP8.07□□□□□ -1.12
VPS35-206ENST00000565228 TRAP1Q12931 704 aaKnown RBP8.07□□□□□ -1.12
VPS35-206ENST00000565228 CCNIQ14094 377 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 P2RY6Q15077 328 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 ACKR1Q16570 336 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 HIST3H3Q16695 136 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 CEACAM16Q2WEN9 425 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 ALKBH2Q6NS38 261 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 PGBD2Q6P3X8 592 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 KLHL17Q6TDP4 642 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 TMPRSS11FQ6ZWK6 438 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 WFDC8Q8IUA0 241 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 UEVLDQ8IX04 471 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 HS3ST5Q8IZT8 346 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 ARHGAP24Q8N264 748 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 UBE2J2Q8N2K1 259 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 OR4K5Q8NGD3 323 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 OR1K1Q8NGR3 316 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 OR52N5Q8NH56 324 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 ZNF519Q8TB69 540 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 ASB10Q8WXI3 467 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 KISS1RQ969F8 398 aaPredicted RBP8.07□□□□□ -1.12
VPS35-206ENST00000565228 HS6ST2Q96MM7 605 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 ZNF75AQ96N20 296 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 ZNF347Q96SE7 839 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 TMEM204Q9BSN7 226 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 C1QTNF6Q9BXI9 259 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 MRPL13Q9BYD1 178 aaKnown RBP8.07□□□□□ -1.12
VPS35-206ENST00000565228 LINC00470Q9BZP3 86 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 LRMDAQ9H2I8 198 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 ASB6Q9NWX5 421 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.07□□□□□ -1.12
VPS35-206ENST00000565228 ZNF346Q9UL40 294 aaKnown RBP8.07□□□□□ -1.12
VPS35-206ENST00000565228 RCE1Q9Y256 329 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 SIGLEC7Q9Y286 467 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 MAGED1Q9Y5V3 778 aaPredicted RBP8.07□□□□□ -1.12
VPS35-206ENST00000565228 USF3Q68DE3 2245 aa8.07□□□□□ -1.12
VPS35-206ENST00000565228 HIVEP1P15822 2718 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 A0A096LPE4 126 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 A0A1W2PPZ6 126 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 OR5H1A6NKK0 313 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 H7C1C5 153 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 M0R3G1 203 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 CLOCKO15516 846 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 RNF13O43567 381 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 TRMUO75648 421 aaKnown RBP8.06□□□□□ -1.12
VPS35-206ENST00000565228 IGHMP01871 453 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 CELA3BP08861 270 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 CDH2P19022 906 aaPredicted RBP8.06□□□□□ -1.12
VPS35-206ENST00000565228 GTF2E2P29084 291 aaKnown RBP8.06□□□□□ -1.12
VPS35-206ENST00000565228 MPGP29372 298 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 LCN6P62502 163 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 ARF1P84077 181 aaKnown RBP8.06□□□□□ -1.12
VPS35-206ENST00000565228 IL1RL1Q01638 556 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 FMODQ06828 376 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 C1DQ13901 141 aaKnown RBP8.06□□□□□ -1.12
VPS35-206ENST00000565228 MFSD13AQ14CX5 517 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 STK11Q15831 433 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 TBRG1Q3YBR2 411 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 FGD3Q5JSP0 725 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 OTPQ5XKR4 325 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 B3GLCTQ6Y288 498 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 ZNF730Q6ZMV8 503 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 FAM122BQ7Z309 247 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 NANOGNBQ7Z5D8 188 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 STK32CQ86UX6 486 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 OR8D4Q8NGM9 314 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 OR6X1Q8NH79 312 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 IGFBPL1Q8WX77 278 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 PIK3IP1Q96FE7 263 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 PLPPR2Q96GM1 343 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 BOD1Q96IK1 185 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 ALPK1Q96QP1 1244 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 MED18Q9BUE0 208 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 CHID1Q9BWS9 393 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 OR10A4Q9H209 315 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 ANKRD19PQ9H560 264 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 NTN4Q9HB63 628 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 CRLF2Q9HC73 371 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 SLC17A5Q9NRA2 495 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 TAS2R16Q9NYV7 291 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms