RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 YLPM1P49750 1951 aaKnown RBP16■□□□□ 0.15
CLN3-214ENST00000565140 HIVEP2P31629 2446 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 CHD3Q12873 2000 aaKnown RBP15.99■□□□□ 0.15
CLN3-214ENST00000565140 NME4O00746 187 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 IGLV1-44P01699 117 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 CELA3BP08861 270 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 CECR9P0C854 216 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 APOBEC3AP31941 199 aaPredicted RBP15.99■□□□□ 0.15
CLN3-214ENST00000565140 BIDP55957 195 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 SELENOWP63302 87 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 SLC35D2Q76EJ3 337 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 POM121Q96HA1 1249 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 MYLK2Q9H1R3 596 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 EFCAB1Q9HAE3 211 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 ZNF229Q9UJW7 825 aa15.99■□□□□ 0.15
CLN3-214ENST00000565140 SONP18583 2426 aaKnown RBP15.99■□□□□ 0.15
CLN3-214ENST00000565140 OR5F1O95221 314 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 IGKV3-15P01624 115 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 MT-ND1P03886 318 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 HIST1H2ABP04908 130 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 HEXAP06865 529 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 CBR1P16152 277 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 FUT4P22083 530 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 PAX7P23759 505 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 CALCRP30988 508 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 SLC7A2P52569 658 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 NAAAQ02083 359 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 ETFDHQ16134 617 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 MST1LQ2TV78 715 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 C3orf36Q3SXR2 165 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 DNM1P46Q6ZS02 220 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 HIST3H2AQ7L7L0 130 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 ARPINQ7Z6K5 226 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 FAM169BQ8N8A8 192 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 OR6N1Q8NGY5 312 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 HTRA1Q92743 480 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 HIST1H2ACQ93077 130 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 HOPXQ9BPY8 73 aaPredicted RBP15.98■□□□□ 0.15
CLN3-214ENST00000565140 KATNB1Q9BVA0 655 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 POLR2J2Q9GZM3 115 aaKnown RBP15.98■□□□□ 0.15
CLN3-214ENST00000565140 POLR2J3Q9H1A7 115 aaKnown RBP15.98■□□□□ 0.15
CLN3-214ENST00000565140 B3GAT2Q9NPZ5 323 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 C20orf141Q9NUB4 165 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 AP3M1Q9Y2T2 418 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 SNX13Q9Y5W8 968 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 ABCA2Q9BZC7 2435 aa15.98■□□□□ 0.15
CLN3-214ENST00000565140 JMJD1CQ15652 2540 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 RNF223E7ERA6 249 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 BLOC1S5-TXNDC5H3BN57 136 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 RNF13O43567 381 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 SSX4O60224 188 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 CRYAAP02489 173 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 UMPSP11172 480 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 FUT1P19526 365 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 DRD4P21917 467 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 RBM34P42696 430 aaKnown RBP15.97■□□□□ 0.15
CLN3-214ENST00000565140 GYS2P54840 703 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 MELKQ14680 651 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 VTCN1Q7Z7D3 282 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 MDP1Q86V88 176 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 MAPK1IP1LQ8NDC0 245 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 OR6X1Q8NH79 312 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 TMEM239Q8WW34 195 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 TMEM54Q969K7 222 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 HS6ST2Q96MM7 605 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 ULBP2Q9BZM5 246 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 FAM107BQ9H098 131 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 B3GNT2Q9NY97 397 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 A4GNTQ9UNA3 340 aa15.97■□□□□ 0.15
CLN3-214ENST00000565140 FAM171A2A8MVW0 826 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 CXCR6O00574 342 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 OR7A10O76100 309 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 HLA-HP01893 362 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 YAP1P46937 504 aaKnown RBP15.96■□□□□ 0.15
CLN3-214ENST00000565140 CAPZA2P47755 286 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 CSNK1A1P48729 337 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 GSK3BP49841 420 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 NUDT2P50583 147 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 IDH3GP51553 393 aaPredicted RBP15.96■□□□□ 0.15
CLN3-214ENST00000565140 LSM11P83369 360 aaKnown RBP eCLIP15.96■□□□□ 0.15
CLN3-214ENST00000565140 HGFACQ04756 655 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 SWI5Q1ZZU3 235 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 LRFN4Q6PJG9 635 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 HACD2Q6Y1H2 254 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 ZNF813Q6ZN06 617 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 ZNF627Q7L945 461 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 NANOGNBQ7Z5D8 188 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 SGTBQ96EQ0 304 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 ADAD1Q96M93 576 aaKnown RBP15.96■□□□□ 0.15
CLN3-214ENST00000565140 KCNS3Q9BQ31 491 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 NOX3Q9HBY0 568 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 ZNF224Q9NZL3 707 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 POFUT2Q9Y2G5 429 aa15.96■□□□□ 0.15
CLN3-214ENST00000565140 SNX3O60493 162 aa15.95■□□□□ 0.14
CLN3-214ENST00000565140 F13BP05160 661 aa15.95■□□□□ 0.14
CLN3-214ENST00000565140 THRBP10828 461 aa15.95■□□□□ 0.14
CLN3-214ENST00000565140 B4GALT1P15291 398 aa15.95■□□□□ 0.14
CLN3-214ENST00000565140 LSP1P33241 339 aa15.95■□□□□ 0.14
CLN3-214ENST00000565140 ARR3P36575 388 aa15.95■□□□□ 0.14
CLN3-214ENST00000565140 RPL18Q07020 188 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms