RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 ARMC4Q5T2S8 1044 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 PLBD1Q6P4A8 553 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 GFRALQ6UXV0 394 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 KDM8Q8N371 416 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 SLC37A3Q8NCC5 494 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 NOXO1Q8NFA2 376 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 OR6X1Q8NH79 312 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 ROBO4Q8WZ75 1007 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 ZNF566Q969W8 418 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 SNRNP40Q96DI7 357 aaKnown RBP11.43□□□□□ -0.58
CLK3-214ENST00000564096 TRIB1Q96RU8 372 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 YTHDF1Q9BYJ9 559 aaKnown RBP11.43□□□□□ -0.58
CLK3-214ENST00000564096 CCNB1IP1Q9NPC3 277 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 GLRX2Q9NS18 164 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 MED29Q9NX70 200 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 DNAJC27Q9NZQ0 273 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 CLCF1Q9UBD9 225 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 MYRFQ9Y2G1 1151 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 RPL36Q9Y3U8 105 aaKnown RBP11.43□□□□□ -0.58
CLK3-214ENST00000564096 NCKAP5O14513 1909 aa11.43□□□□□ -0.58
CLK3-214ENST00000564096 IGKV3D-15A0A087WSY6 115 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 PRSS37A4D1T9 235 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 ZNF716A6NP11 495 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 ZNF724A8MTY0 619 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 KDM4EB2RXH2 506 aaPredicted RBP11.42□□□□□ -0.58
CLK3-214ENST00000564096 SLC1A7O00341 560 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 PRRG2O14669 202 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 ARHGEF9O43307 516 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 RAMP1O60894 148 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 FAM20BO75063 409 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 SLC2A10O95528 541 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 HOXD4P09016 255 aaPredicted RBP11.42□□□□□ -0.58
CLK3-214ENST00000564096 CCDC159P0C7I6 412 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 SLC25A1P53007 311 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 CLDN17P56750 224 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 GABARAPL2P60520 117 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 CDK5R2Q13319 367 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 TMED1Q13445 227 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 LY6DQ14210 128 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 EIF2S3LQ2VIR3 472 aaKnown RBP11.42□□□□□ -0.58
CLK3-214ENST00000564096 KCTD21Q4G0X4 260 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 ACSF3Q4G176 576 aaPredicted RBP11.42□□□□□ -0.58
CLK3-214ENST00000564096 C6orf141Q5SZD1 244 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 OR2A2Q6IF42 318 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 NIPAL3Q6P499 406 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 CREB3L2Q70SY1 520 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 CD163Q86VB7 1156 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 CPOQ8IVL8 374 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 OR5M9Q8NGP3 310 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 OR2T4Q8NH00 348 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 FAM57AQ8TBR7 257 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 ABHD3Q8WU67 409 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 APH1BQ8WW43 257 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 TMEM45BQ96B21 275 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 SLC25A44Q96H78 314 aaPredicted RBP11.42□□□□□ -0.58
CLK3-214ENST00000564096 NMNAT3Q96T66 252 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 RNF122Q9H9V4 155 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 HINT3Q9NQE9 182 aaKnown RBP11.42□□□□□ -0.58
CLK3-214ENST00000564096 ASB6Q9NWX5 421 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 UBAP1Q9NZ09 502 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 VSX1Q9NZR4 365 aaPredicted RBP11.42□□□□□ -0.58
CLK3-214ENST00000564096 TPRKBQ9Y3C4 175 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 FLVCR1Q9Y5Y0 555 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 DMXL2Q8TDJ6 3036 aa11.42□□□□□ -0.58
CLK3-214ENST00000564096 CACNA1GO43497 2377 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 OR6C65A6NJZ3 312 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 H7C1C5 153 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 HAX1O00165 279 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 ENTPD6O75354 484 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 SLC43A1O75387 559 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 WBP4O75554 376 aaKnown RBP11.41□□□□□ -0.58
CLK3-214ENST00000564096 KLK2P20151 261 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 CRABP1P29762 137 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 HTR1FP30939 366 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 FMO3P31513 532 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 CSNK1A1P48729 337 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 CENPAP49450 140 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 BLVRAP53004 296 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 CASP6P55212 293 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 LCN6P62502 163 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 POU4F2Q12837 409 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 KLHL12Q53G59 568 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 SLC35D3Q5M8T2 416 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 ZNF585AQ6P3V2 769 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 UGT2A3Q6UWM9 527 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 ADGRE4PQ86SQ3 457 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 CYB561A3Q8NBI2 242 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 PROKR2Q8NFJ6 384 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 BPIFB6Q8NFQ5 453 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 IPCEF1Q8WWN9 437 aaPredicted RBP11.41□□□□□ -0.58
CLK3-214ENST00000564096 WNT2BQ93097 391 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 GMPPAQ96IJ6 420 aaPredicted RBP11.41□□□□□ -0.58
CLK3-214ENST00000564096 ZNF582Q96NG8 517 aaPredicted RBP11.41□□□□□ -0.58
CLK3-214ENST00000564096 TM9SF2Q99805 663 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 SYT4Q9H2B2 425 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 TP63Q9H3D4 680 aaPredicted RBP11.41□□□□□ -0.58
CLK3-214ENST00000564096 CALHM2Q9HA72 323 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 BCO1Q9HAY6 547 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 B3GAT2Q9NPZ5 323 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 RPRD1BQ9NQG5 326 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms