RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MMEL1Q495T6 779 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 ALG10BQ5I7T1 473 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 LRIF1Q5T3J3 769 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 LINC00114Q6XXX2 140 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 RINLQ6ZS11 566 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 PIWIL3Q7Z3Z3 882 aaKnown RBP14.08□□□□□ -0.16
CLN3-208ENST00000561505 MAVSQ7Z434 540 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 ZNF584Q8IVC4 421 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 FAM216AQ8WUB2 273 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 SLC47A1Q96FL8 570 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 TXNDC15Q96J42 360 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 TMEM43Q9BTV4 400 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 EMC6Q9BV81 110 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 METTL17Q9H7H0 456 aaPredicted RBP14.08□□□□□ -0.16
CLN3-208ENST00000561505 G6PC2Q9NQR9 355 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 ZNF275Q9NSD4 429 aaPredicted RBP14.08□□□□□ -0.16
CLN3-208ENST00000561505 MYEF2Q9P2K5 600 aaKnown RBP14.08□□□□□ -0.16
CLN3-208ENST00000561505 RPS6KB2Q9UBS0 482 aa14.08□□□□□ -0.16
CLN3-208ENST00000561505 DYSFO75923 2080 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 TRAV20A0A0B4J274 112 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 PLPP3O14495 311 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 TPST1O60507 370 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 NCR1O76036 304 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 SERPINA5P05154 406 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 EGR1P18146 543 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 HILS1P60008 231 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 SCGB2A2Q13296 93 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 TUSC1Q2TAM9 212 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 SWT1Q5T5J6 900 aaKnown RBP14.07□□□□□ -0.16
CLN3-208ENST00000561505 ZNF813Q6ZN06 617 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 SNX32Q86XE0 403 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 MSRB3Q8IXL7 192 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 OR9I1Q8NGQ6 314 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 FOXB1Q99853 325 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 EVA1AQ9H8M9 152 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 CACYBPQ9HB71 228 aaKnown RBP14.07□□□□□ -0.16
CLN3-208ENST00000561505 B3GAT2Q9NPZ5 323 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 SLC52A3Q9NQ40 469 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 MED29Q9NX70 200 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 NKIRAS2Q9NYR9 191 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 SLC25A37Q9NYZ2 338 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 TESQ9UGI8 421 aaKnown RBP14.07□□□□□ -0.16
CLN3-208ENST00000561505 GRIP1Q9Y3R0 1128 aa14.07□□□□□ -0.16
CLN3-208ENST00000561505 TRBV5-3A0A0A0MS03 114 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 SPRY1O43609 319 aaPredicted RBP14.06□□□□□ -0.16
CLN3-208ENST00000561505 UBL3O95164 117 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 SAGP10523 405 aaPredicted RBP14.06□□□□□ -0.16
CLN3-208ENST00000561505 CD79AP11912 226 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 ZNF250P15622 560 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 ALDH3B1P43353 468 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 CAPZA2P47755 286 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 GIPRP48546 466 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 AQP5P55064 265 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 PIGFQ07326 219 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 PUDPQ08623 228 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 GLIPR1L2Q4G1C9 344 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 WDR88Q6ZMY6 472 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 C10orf111Q8N326 155 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 FGFBP3Q8TAT2 258 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 TMEM54Q969K7 222 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 ZMYND19Q96E35 227 aaPredicted RBP14.06□□□□□ -0.16
CLN3-208ENST00000561505 MOGAT1Q96PD6 335 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 OR52B2Q96RD2 323 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 EPYCQ99645 322 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 SYT3Q9BQG1 590 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 ZNF416Q9BWM5 594 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 OCEL1Q9H607 264 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 KCNK9Q9NPC2 374 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 SLC7A8Q9UHI5 535 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 ZNF346Q9UL40 294 aaKnown RBP14.06□□□□□ -0.16
CLN3-208ENST00000561505 POFUT2Q9Y2G5 429 aa14.06□□□□□ -0.16
CLN3-208ENST00000561505 UBDO15205 165 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 DEAF1O75398 565 aaPredicted RBP14.05□□□□□ -0.16
CLN3-208ENST00000561505 MT-ATP6P00846 226 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 AVPP01185 164 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 B4GALT1P15291 398 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 TCN1P20061 433 aaPredicted RBP14.05□□□□□ -0.16
CLN3-208ENST00000561505 ZP4Q12836 540 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 MAD2L1BPQ15013 274 aaPredicted RBP14.05□□□□□ -0.16
CLN3-208ENST00000561505 C6orf10Q5SRN2 563 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 REEP3Q6NUK4 255 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 FUNDC1Q8IVP5 155 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 SKA3Q8IX90 412 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 TEX29Q8N6K0 151 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 OR51F2Q8NH61 342 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 OR6X1Q8NH79 312 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 SGMS2Q8NHU3 365 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 ZNF418Q8TF45 676 aaPredicted RBP14.05□□□□□ -0.16
CLN3-208ENST00000561505 LRRC37BQ96QE4 947 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 WFDC6Q9BQY6 131 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 SPATA5L1Q9BVQ7 753 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 ULBP2Q9BZM5 246 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 TMEM38AQ9H6F2 299 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 TREM2Q9NZC2 230 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 PKD1L1Q8TDX9 2849 aa14.05□□□□□ -0.16
CLN3-208ENST00000561505 SNAP29O95721 258 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 GPX2P18283 190 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 CBLP22681 906 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 CRYBB2P43320 205 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 PTDSS1P48651 473 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms