RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 HSPB2A8KAH6 182 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 EIF1AYO14602 144 aaKnown RBP10.51□□□□□ -0.73
LDLR-212ENST00000560467 XKRYO14609 159 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 CDC42EP2O14613 210 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 NPIPB7O75200 414 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 PTP4A3O75365 173 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 VAMP5O95183 116 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 PMS2P2O95744 297 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 FUT4P22083 530 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 MYF6P23409 242 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 GRPRP30550 384 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 DIO1P49895 249 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 EGR4Q05215 589 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 TOP3AQ13472 1001 aaPredicted RBP10.51□□□□□ -0.73
LDLR-212ENST00000560467 PDK3Q15120 406 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 HSPB2Q16082 182 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 DEFB113Q30KQ7 82 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 ACSF3Q4G176 576 aaPredicted RBP10.51□□□□□ -0.73
LDLR-212ENST00000560467 SLX4IPQ5VYV7 408 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 ANKRD34AQ69YU3 496 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 HBMQ6B0K9 141 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 GPR139Q6DWJ6 353 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 GTF2IRD2BQ6EKJ0 949 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 GTF2IRD2Q86UP8 949 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 UBQLNLQ8IYU4 475 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 ANKK1Q8NFD2 765 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 OR8J1Q8NGP2 316 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 NEIL3Q8TAT5 605 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 RFKQ969G6 155 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 MUS81Q96NY9 551 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 NR1H4Q96RI1 486 aaPredicted RBP10.51□□□□□ -0.73
LDLR-212ENST00000560467 PRRG4Q9BZD6 226 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 INIPQ9NRY2 104 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 SCN3BQ9NY72 215 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 TVP23BQ9NYZ1 205 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 REV1Q9UBZ9 1251 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 SIGLEC7Q9Y286 467 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 HIF3AQ9Y2N7 669 aa10.51□□□□□ -0.73
LDLR-212ENST00000560467 ZC3H12DA2A288 527 aaKnown RBP10.5□□□□□ -0.73
LDLR-212ENST00000560467 MCIDASD6RGH6 385 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 DVL2O14641 736 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 BGLAPP02818 100 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 OPN1LWP04000 364 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 RAF1P04049 648 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 ASAH2BP0C7U1 165 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 APEHP13798 732 aaKnown RBP10.5□□□□□ -0.73
LDLR-212ENST00000560467 ZNF3P17036 446 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 ENPP1P22413 925 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 GRK5P34947 590 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 POLR2IP36954 125 aaKnown RBP10.5□□□□□ -0.73
LDLR-212ENST00000560467 PEX19P40855 299 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 AQP2P41181 271 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 EIF1AXP47813 144 aaKnown RBP10.5□□□□□ -0.73
LDLR-212ENST00000560467 DAP3P51398 398 aaKnown RBP10.5□□□□□ -0.73
LDLR-212ENST00000560467 RAC3P60763 192 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 LSM11P83369 360 aaKnown RBP eCLIP10.5□□□□□ -0.73
LDLR-212ENST00000560467 CDK5Q00535 292 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 PUDPQ08623 228 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 FBXL19-AS1Q494R0 122 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 ZNF691Q5VV52 312 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 MEDAGQ5VYS4 303 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 FAM205BPQ63HN1 556 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 BIVMQ86UB2 503 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 JAZF1Q86VZ6 243 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 KRTAP1-3Q8IUG1 177 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 UEVLDQ8IX04 471 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 PM20D2Q8IYS1 436 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 LRRC17Q8N6Y2 441 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 OR2V1Q8NHB1 315 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 CPNE4Q96A23 557 aaPredicted RBP10.5□□□□□ -0.73
LDLR-212ENST00000560467 OTULINQ96BN8 352 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 MOGAT1Q96PD6 335 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 ERMAPQ96PL5 475 aaPredicted RBP10.5□□□□□ -0.73
LDLR-212ENST00000560467 PITX2Q99697 317 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 GPA33Q99795 319 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 KLHDC3Q9BQ90 382 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 YTHDF1Q9BYJ9 559 aaKnown RBP10.5□□□□□ -0.73
LDLR-212ENST00000560467 SLC25A19Q9HC21 320 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 KLHL21Q9UJP4 597 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 MCTS1Q9ULC4 181 aaKnown RBP10.5□□□□□ -0.73
LDLR-212ENST00000560467 EDARQ9UNE0 448 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 RASD1Q9Y272 281 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 NOX1Q9Y5S8 564 aa10.5□□□□□ -0.73
LDLR-212ENST00000560467 A6NIZ1 184 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 ZNF726A6NNF4 738 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 M0R082 166 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 DLGAP1O14490 977 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 PLPP3O14495 311 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 IMPA2O14732 288 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 AKAP8O43823 692 aaKnown RBP10.49□□□□□ -0.73
LDLR-212ENST00000560467 CD14P08571 375 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 NR2C1P13056 603 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 CEACAM8P31997 349 aaPredicted RBP10.49□□□□□ -0.73
LDLR-212ENST00000560467 PCYT1AP49585 367 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 AGFG1P52594 562 aaKnown RBP10.49□□□□□ -0.73
LDLR-212ENST00000560467 GFRA1P56159 465 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 CTXN1P60606 82 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 RAP1BP61224 184 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 RAP1AP62834 184 aa10.49□□□□□ -0.73
LDLR-212ENST00000560467 DAZAP2Q15038 168 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms