RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 COX5AP20674 150 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 IGHV1-2P23083 117 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 PRPS1P60891 318 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 ERVK-25P63136 954 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 TSC22D1Q15714 1073 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 SMARCD3Q6STE5 483 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 STAC2Q6ZMT1 411 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 BEND4Q6ZU67 534 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 CXorf67Q86X51 503 aaPredicted RBP19.21■□□□□ 0.67
SNX1-210ENST00000560260 ACBD4Q8NC06 268 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 OR8D4Q8NGM9 314 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 OR6X1Q8NH79 312 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 NRBF2Q96F24 287 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 PLA2G12AQ9BZM1 189 aa19.21■□□□□ 0.67
SNX1-210ENST00000560260 ZNF346Q9UL40 294 aaKnown RBP19.21■□□□□ 0.67
SNX1-210ENST00000560260 A0A1W2PRG6 482 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 SOX14O95416 240 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 BCL10O95999 233 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 CD14P08571 375 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 ITGA5P08648 1049 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 IGFBP2P18065 325 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 RPL4P36578 427 aaKnown RBP19.2■□□□□ 0.66
SNX1-210ENST00000560260 FAPQ12884 760 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 KLHL17Q6TDP4 642 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 RASSF6Q6ZTQ3 369 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 FAM122BQ7Z309 247 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 C20orf196Q8IYI0 205 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 UBE2J2Q8N2K1 259 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 ZNF519Q8TB69 540 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 CENPNQ96H22 339 aaPredicted RBP19.2■□□□□ 0.66
SNX1-210ENST00000560260 SAMD8Q96LT4 415 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 BDH2Q9BUT1 245 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 POLDIP3Q9BY77 421 aaKnown RBP19.2■□□□□ 0.66
SNX1-210ENST00000560260 LINC00470Q9BZP3 86 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 TXNIPQ9H3M7 391 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 CDH10Q9Y6N8 788 aa19.2■□□□□ 0.66
SNX1-210ENST00000560260 SAC3D1A6NKF1 404 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 CNOT4O95628 575 aaKnown RBP19.19■□□□□ 0.66
SNX1-210ENST00000560260 PGA4P0DJD7 388 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 PGA3P0DJD8 388 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 DAP3P51398 398 aaKnown RBP19.19■□□□□ 0.66
SNX1-210ENST00000560260 RPL27P61353 136 aaKnown RBP19.19■□□□□ 0.66
SNX1-210ENST00000560260 RFX4Q33E94 735 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 FAHD1Q6P587 224 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 CD300LDQ6UXZ3 194 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 POMGNT2Q8NAT1 580 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 HDAC2Q92769 488 aaKnown RBP19.19■□□□□ 0.66
SNX1-210ENST00000560260 TMEM54Q969K7 222 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 Q96M85 177 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 ADAD1Q96M93 576 aaKnown RBP19.19■□□□□ 0.66
SNX1-210ENST00000560260 GABARAPL1Q9H0R8 117 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 NRIP3Q9NQ35 241 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 ELOVL5Q9NYP7 299 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 REV1Q9UBZ9 1251 aa19.19■□□□□ 0.66
SNX1-210ENST00000560260 PTPN13Q12923 2485 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 ZNF726A6NNF4 738 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 TRMUO75648 421 aaKnown RBP19.18■□□□□ 0.66
SNX1-210ENST00000560260 LYZL6O75951 148 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 PPP1R3DO95685 299 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 ZNF23P17027 643 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 COL8A1P27658 744 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 UGT2B10P36537 528 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 MESTQ5EB52 335 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 C9orf135Q5VTT2 229 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 RASD2Q96D21 266 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 ZNF837Q96EG3 531 aaPredicted RBP19.18■□□□□ 0.66
SNX1-210ENST00000560260 SLC25A44Q96H78 314 aaPredicted RBP19.18■□□□□ 0.66
SNX1-210ENST00000560260 MRPL13Q9BYD1 178 aaKnown RBP19.18■□□□□ 0.66
SNX1-210ENST00000560260 ASB6Q9NWX5 421 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 UPB1Q9UBR1 384 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 OAZ3Q9UMX2 235 aa19.18■□□□□ 0.66
SNX1-210ENST00000560260 M0R3G1 203 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 PSMB1P20618 241 aaKnown RBP19.17■□□□□ 0.66
SNX1-210ENST00000560260 PCYT1AP49585 367 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 DAPP51397 102 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 SORDQ00796 357 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 TAF11Q15544 211 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 SFRP5Q5T4F7 317 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 HIST2H2BCQ6DN03 193 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 DPY19L2P2Q6ZN68 376 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 C22orf34Q6ZV56 151 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 HIPK1Q86Z02 1210 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 C10orf67Q8IYJ2 551 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 PQLC1Q8N2U9 271 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 ZNF433Q8N7K0 673 aaPredicted RBP19.17■□□□□ 0.66
SNX1-210ENST00000560260 CLDN22Q8N7P3 220 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 ATG16L2Q8NAA4 619 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 ICA1LQ8NDH6 482 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 NOXO1Q8NFA2 376 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 NMD3Q96D46 503 aaKnown RBP19.17■□□□□ 0.66
SNX1-210ENST00000560260 LRR1Q96L50 414 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 SMURF2Q9HAU4 748 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 IL20Q9NYY1 176 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 PLEKHB1Q9UF11 243 aaPredicted RBP19.17■□□□□ 0.66
SNX1-210ENST00000560260 IER3IP1Q9Y5U9 82 aa19.17■□□□□ 0.66
SNX1-210ENST00000560260 TEX13CA0A0J9YWL9 993 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 G3V2T6 193 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 ANXA8P13928 327 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 ACADSP16219 412 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 GSTM3P21266 225 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms