RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 NEIL3Q8TAT5 605 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 ACMSDQ8TDX5 336 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 NRGNQ92686 78 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 FGF14Q92915 247 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 SGK3Q96BR1 496 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 LRRC58Q96CX6 371 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 FAM122AQ96E09 287 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 DUS3LQ96G46 650 aaKnown RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 FCRL1Q96LA6 429 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 HSFY1Q96LI6 401 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 SMIM14Q96QK8 99 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 OR5B12Q96R08 314 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 SORT1Q99523 831 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 HIST1H4GQ99525 98 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CHP1Q99653 195 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 ATP5SQ99766 215 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 C11orf70Q9BRQ4 267 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 RIOK1Q9BRS2 568 aaKnown RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 NICN1Q9BSH3 213 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 C20orf24Q9BUV8 137 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 YTHDF1Q9BYJ9 559 aaKnown RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 SELENOIQ9C0D9 397 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 GBA3Q9H227 469 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 SRMSQ9H3Y6 488 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 GEMIN7Q9H840 131 aaKnown RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 ZDHHC11Q9H8X9 412 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 SIAEQ9HAT2 523 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 UGT1A7Q9HAW7 530 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 UGT1A8Q9HAW9 530 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 BEX1Q9HBH7 125 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CRLF2Q9HC73 371 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 SH2D2AQ9NP31 389 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 SLCO1B3Q9NPD5 702 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 TUBG2Q9NRH3 451 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CCL28Q9NRJ3 127 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 CALYQ9NYX4 217 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 AHSPQ9NZD4 102 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 MTRF1LQ9UGC7 380 aaKnown RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 DCDC2Q9UHG0 476 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 BTNL2Q9UIR0 455 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 NAP1L2Q9ULW6 460 aaPredicted RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 PACSIN2Q9UNF0 486 aaPredicted RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 ASF1AQ9Y294 204 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 COL2A1P02458 1487 aaPredicted RBP1.15□□□□□ -2.23
USP3-209ENST00000558925 ADAMTS9Q9P2N4 1935 aa1.15□□□□□ -2.23
USP3-209ENST00000558925 INSRP06213 1382 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 MSH6P52701 1360 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 SMCO3A2RU48 225 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ZNF726A6NNF4 738 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 A8MUA0 341 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 C9JVG2 144 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 KRTAP4-16G5E9R7 235 aaPredicted RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 WRBO00258 174 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 HAT1O14929 419 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 EMC8O43402 210 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 CHST1O43916 411 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 FAM189A1O60320 539 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ZNF861PO60384 105 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ERLIN2O94905 339 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 SNAPINO95295 136 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 CLIC3O95833 236 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 LY6G6DO95868 133 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 AGTP01019 485 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 IGKV3-15P01624 115 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 KRT14P02533 472 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 KRT6AP02538 564 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ALDOBP05062 364 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 FGF1P05230 155 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 GIPP09681 153 aaPredicted RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 TBPP20226 339 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 CNR1P21554 472 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 IFNA8P32881 189 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 SSR1P43307 286 aaKnown RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 OR1G1P47890 313 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 RFX3P48380 749 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ARRB1P49407 418 aaPredicted RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 CSNK1EP49674 416 aaKnown RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 TMED10P49755 219 aaKnown RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 RORCP51449 518 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 FGF8P55075 233 aaPredicted RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 FBXW4P57775 412 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 YWHAGP61981 247 aaKnown RBP eCLIP1.14□□□□□ -2.23
USP3-209ENST00000558925 MRPS22P82650 360 aaKnown RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 ZNF92Q03936 586 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 TLE4Q04727 773 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 LIPEQ05469 1076 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 DAZ2Q13117 558 aaKnown RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 ARFRP1Q13795 201 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 FZD2Q14332 565 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 PSG5Q15238 335 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 CYTH1Q15438 398 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ZNF79Q15937 498 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 NRF1Q16656 503 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 KCTD19Q17RG1 926 aaPredicted RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 VAX1Q5SQQ9 334 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ANKRD26P1Q6NSI1 321 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 MBOAT1Q6ZNC8 495 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ACP7Q6ZNF0 438 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 RNF165Q6ZSG1 346 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 LINC00173Q6ZV60 143 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms