RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 HIVEP2P31629 2446 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 KPNA4O00629 521 aaPredicted RBP10.06□□□□□ -0.8
RTN3-209ENST00000538995 SMAD7O15105 426 aaKnown RBP10.06□□□□□ -0.8
RTN3-209ENST00000538995 LY6G6DO95868 133 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 MT-ND1P03886 318 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 HIST1H2ABP04908 130 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 CECR9P0C854 216 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 IFNGR1P15260 489 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 IFNA8P32881 189 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 ACVR1BP36896 505 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 CSNK1A1P48729 337 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 DSCR9P59020 149 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 SELENOWP63302 87 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 TNK1Q13470 666 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 CARD17Q5XLA6 110 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 C8orf82Q6P1X6 216 aaPredicted RBP10.06□□□□□ -0.8
RTN3-209ENST00000538995 SLC35D2Q76EJ3 337 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 HIST3H2AQ7L7L0 130 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 SLC46A3Q7Z3Q1 461 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 HDDC2Q7Z4H3 204 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 SLC15A3Q8IY34 581 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 NUP37Q8NFH4 326 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 IL17RDQ8NFM7 739 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 OR6N1Q8NGY5 312 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 LIPHQ8WWY8 451 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 NANOS1Q8WY41 292 aaKnown RBP10.06□□□□□ -0.8
RTN3-209ENST00000538995 HIST1H2ACQ93077 130 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 ZNF837Q96EG3 531 aaPredicted RBP10.06□□□□□ -0.8
RTN3-209ENST00000538995 TXNDC15Q96J42 360 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 PRRC1Q96M27 445 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 NSRP1Q9H0G5 558 aaKnown RBP10.06□□□□□ -0.8
RTN3-209ENST00000538995 DENND2DQ9H6A0 471 aaPredicted RBP10.06□□□□□ -0.8
RTN3-209ENST00000538995 EFCAB1Q9HAE3 211 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 MEPEQ9NQ76 525 aaPredicted RBP10.06□□□□□ -0.8
RTN3-209ENST00000538995 CA10Q9NS85 328 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 TAS2R5Q9NYW4 299 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 RIMS3Q9UJD0 308 aa10.06□□□□□ -0.8
RTN3-209ENST00000538995 FBXO9Q9UK97 447 aaPredicted RBP10.06□□□□□ -0.8
RTN3-209ENST00000538995 NPIPB13A6NJU9 1138 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 CENPBD1B2RD01 187 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 NPIPB4C9JG80 1138 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 C11orf98E9PRG8 122 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 RNF13O43567 381 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 SERPINI2O75830 405 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 OR7A10O76100 309 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 UMPSP11172 480 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 HOXB4P17483 251 aaPredicted RBP10.05□□□□□ -0.8
RTN3-209ENST00000538995 TNFRSF1BP20333 461 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 SLC7A2P52569 658 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 NUDT6P53370 316 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 UGT2B15P54855 530 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 BIDP55957 195 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 TUBA1BP68363 451 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 TUBA4AP68366 448 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 LIPEQ05469 1076 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 ST3GAL3Q11203 375 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 PIN1Q13526 163 aaPredicted RBP10.05□□□□□ -0.8
RTN3-209ENST00000538995 CAMK2DQ13557 499 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 RAB35Q15286 201 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 PHYHD1Q5SRE7 291 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 ZNF813Q6ZN06 617 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 TUBA1AQ71U36 451 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 TMEM255BQ8WV15 326 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 TMEM239Q8WW34 195 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 TMEM54Q969K7 222 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 ZNF566Q969W8 418 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 CMTM5Q96DZ9 223 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 SGTBQ96EQ0 304 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 SLC25A44Q96H78 314 aaPredicted RBP10.05□□□□□ -0.8
RTN3-209ENST00000538995 FOXB1Q99853 325 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 MYLK2Q9H1R3 596 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 ZNF442Q9H7R0 627 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 B3GNT2Q9NY97 397 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 GLTPQ9NZD2 209 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 STX18Q9P2W9 335 aaKnown RBP10.05□□□□□ -0.8
RTN3-209ENST00000538995 GDF2Q9UK05 429 aaPredicted RBP10.05□□□□□ -0.8
RTN3-209ENST00000538995 FBXL3Q9UKT7 428 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 POFUT2Q9Y2G5 429 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 MED31Q9Y3C7 131 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 PMF1-BGLAPU3KQ54 211 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 DNHD1Q96M86 4753 aa10.05□□□□□ -0.8
RTN3-209ENST00000538995 FN1P02751 2386 aaKnown RBP10.04□□□□□ -0.8
RTN3-209ENST00000538995 ABCA2Q9BZC7 2435 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 IGHV2OR16-5A0A0B4J2B6 119 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 NME4O00746 187 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 NDUFS7O75251 213 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 SEC14L2O76054 403 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 BCL10O95999 233 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 IGHG1P01857 330 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 IFNW1P05000 195 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 CSF3P09919 207 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 TSPAN19P0C672 248 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 PGA4P0DJD7 388 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 PGA3P0DJD8 388 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 PRDX6P30041 224 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 SERPINF1P36955 418 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 CAPZA2P47755 286 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 OR1E2P47887 323 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 NUDT2P50583 147 aa10.04□□□□□ -0.8
RTN3-209ENST00000538995 DAP3P51398 398 aaKnown RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms