RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ABCD2Q9UBJ2 740 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 A4GNTQ9UNA3 340 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 MOKQ9UQ07 419 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 ZNF503-AS2A6NEH8 195 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 GSTA4O15217 222 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 RNF13O43567 381 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 NDUFS7O75251 213 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 OR7A10O76100 309 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 IGF2P01344 180 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 IGLV1-44P01699 117 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 HIST1H2ABP04908 130 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 CECR9P0C854 216 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 UMPSP11172 480 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 FUT4P22083 530 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 FABP6P51161 128 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 PSME3P61289 254 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 GNGT1P63211 74 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 C3orf36Q3SXR2 165 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 ZNF544Q6NX49 715 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 CBLL1Q75N03 491 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 HIST3H2AQ7L7L0 130 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 NANOGNBQ7Z5D8 188 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 BIVMQ86UB2 503 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 FBXL14Q8N1E6 418 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 MUC15Q8N387 334 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 FAM169BQ8N8A8 192 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 OR6N1Q8NGY5 312 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 OR6X1Q8NH79 312 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 LZICQ8WZA0 190 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 HIST1H2ACQ93077 130 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 SGTBQ96EQ0 304 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 PRRC1Q96M27 445 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 HS6ST2Q96MM7 605 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 BDH2Q9BUT1 245 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 ULBP2Q9BZM5 246 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 SEC61A2Q9H9S3 476 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 B3GAT2Q9NPZ5 323 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 CBLN4Q9NTU7 201 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 GDF2Q9UK05 429 aaPredicted RBP12.88□□□□□ -0.35
USP28-204ENST00000537642 SNX13Q9Y5W8 968 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 ARFGEF3Q5TH69 2177 aa12.88□□□□□ -0.35
USP28-204ENST00000537642 BLOC1S5-TXNDC5H3BN57 136 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 J3KTA2 159 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 ZNF682O95780 498 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 IGKV3-15P01624 115 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 IGHV4-39P01824 125 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 CELA3BP08861 270 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 CBR1P16152 277 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 NCK1P16333 377 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 FUT1P19526 365 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 YAP1P46937 504 aaKnown RBP12.87□□□□□ -0.35
USP28-204ENST00000537642 CSNK1A1P48729 337 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 LSM11P83369 360 aaKnown RBP eCLIP12.87□□□□□ -0.356e-18■■■■■ 77.1
USP28-204ENST00000537642 NAAAQ02083 359 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 RPL18Q07020 188 aaKnown RBP12.87□□□□□ -0.35
USP28-204ENST00000537642 ST3GAL3Q11203 375 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 MELKQ14680 651 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 ZNF627Q7L945 461 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 MDP1Q86V88 176 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 MYPOPQ86VE0 399 aaPredicted RBP12.87□□□□□ -0.35
USP28-204ENST00000537642 LIPHQ8WWY8 451 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 TMEM54Q969K7 222 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 ADAD1Q96M93 576 aaKnown RBP12.87□□□□□ -0.35
USP28-204ENST00000537642 KCTD14Q9BQ13 255 aaPredicted RBP12.87□□□□□ -0.35
USP28-204ENST00000537642 KATNB1Q9BVA0 655 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 CACNG6Q9BXT2 260 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 POFUT2Q9Y2G5 429 aa12.87□□□□□ -0.35
USP28-204ENST00000537642 NDUFAB1O14561 156 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 FFAR1O14842 300 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 SMAD7O15105 426 aaKnown RBP12.86□□□□□ -0.35
USP28-204ENST00000537642 PIP5K1CO60331 668 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 SERPINA1P01009 418 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 IFNW1P05000 195 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 F13BP05160 661 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 TSPAN19P0C672 248 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 CALCRP30988 508 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 APOBEC3AP31941 199 aaPredicted RBP12.86□□□□□ -0.35
USP28-204ENST00000537642 CLEC12BQ2HXU8 276 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 IFI44LQ53G44 452 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 ZNF813Q6ZN06 617 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 PIGWQ7Z7B1 504 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 CCDC36Q8IYA8 594 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 GEMIN6Q8WXD5 167 aaKnown RBP12.86□□□□□ -0.35
USP28-204ENST00000537642 SLC25A44Q96H78 314 aaPredicted RBP12.86□□□□□ -0.35
USP28-204ENST00000537642 HSH2DQ96JZ2 352 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 KCNS3Q9BQ31 491 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 MOV10Q9HCE1 1003 aaKnown RBP12.86□□□□□ -0.35
USP28-204ENST00000537642 MAN2C1Q9NTJ4 1040 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 B3GNT2Q9NY97 397 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 GLTPQ9NZD2 209 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 RHCGQ9UBD6 479 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 MED31Q9Y3C7 131 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 CSPG4Q6UVK1 2322 aa12.86□□□□□ -0.35
USP28-204ENST00000537642 BCL10O95999 233 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 HLA-HP01893 362 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 CRYAAP02489 173 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 PGA4P0DJD7 388 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 PGA3P0DJD8 388 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 B4GALT1P15291 398 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 ARR3P36575 388 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms