RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 DIRAS1O95057 198 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 OR6A2O95222 327 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 H1F0P07305 194 aaKnown RBP11.35□□□□□ -0.59
VPS28-216ENST00000533806 UMPSP11172 480 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 IFI30P13284 250 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 HOXB1P14653 301 aaPredicted RBP11.35□□□□□ -0.59
VPS28-216ENST00000533806 ZNF26P17031 533 aaPredicted RBP11.35□□□□□ -0.59
VPS28-216ENST00000533806 BIDP55957 195 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 ARF1P84077 181 aaKnown RBP11.35□□□□□ -0.59
VPS28-216ENST00000533806 IL1RL1Q01638 556 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 FOXD4Q12950 439 aaPredicted RBP11.35□□□□□ -0.59
VPS28-216ENST00000533806 CAMK2DQ13557 499 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 SEC23BQ15437 767 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 CEACAM16Q2WEN9 425 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 TBRG1Q3YBR2 411 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 ARMC4Q5T2S8 1044 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 LCN8Q6JVE9 175 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 ALKBH2Q6NS38 261 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 PGM2L1Q6PCE3 622 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 PODNL1Q6PEZ8 512 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 LRFN4Q6PJG9 635 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 PIWIL3Q7Z3Z3 882 aaKnown RBP11.35□□□□□ -0.59
VPS28-216ENST00000533806 CYP4Z1Q86W10 505 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 GPR137CQ8N3F9 429 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 LRRC75AQ8NAA5 344 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 SLC25A44Q96H78 314 aaPredicted RBP11.35□□□□□ -0.59
VPS28-216ENST00000533806 PIP5K1AQ99755 562 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 MUC13Q9H3R2 512 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 OBP2BQ9NPH6 170 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 CCM2LQ9NUG4 571 aaPredicted RBP11.35□□□□□ -0.59
VPS28-216ENST00000533806 PLEKHA6Q9Y2H5 1048 aa11.35□□□□□ -0.59
VPS28-216ENST00000533806 ITPR3Q14573 2671 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 TRBV4-1A0A0J9YWV2 114 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 ZNF726A6NNF4 738 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 ZNF99A8MXY4 864 aaPredicted RBP11.34□□□□□ -0.59
VPS28-216ENST00000533806 SHISA9B4DS77 424 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 M0R3G1 203 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 F13BP05160 661 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 PGA4P0DJD7 388 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 PGA3P0DJD8 388 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 ITGA2P17301 1181 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 CDH2P19022 906 aaPredicted RBP11.34□□□□□ -0.59
VPS28-216ENST00000533806 MAGEA2P43356 314 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 LIMS1P48059 325 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 ZNF133P52736 654 aaPredicted RBP11.34□□□□□ -0.59
VPS28-216ENST00000533806 PRPS1P60891 318 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 RUNX1T1Q06455 604 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 ANKDD1AQ495B1 522 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 CARD17Q5XLA6 110 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 HMBOX1Q6NT76 420 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 CYP2R1Q6VVX0 501 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 SPNS3Q6ZMD2 512 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 ZNF730Q6ZMV8 503 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 MEX3DQ86XN8 651 aaKnown RBP11.34□□□□□ -0.59
VPS28-216ENST00000533806 ZNF611Q8N823 705 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 FAM169BQ8N8A8 192 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 NMD3Q96D46 503 aaKnown RBP11.34□□□□□ -0.59
VPS28-216ENST00000533806 ASB9Q96DX5 294 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 CLPTM1LQ96KA5 538 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 TNFRSF13CQ96RJ3 184 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 FOXC2Q99958 501 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 INIPQ9NRY2 104 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 CRNNQ9UBG3 495 aaPredicted RBP11.34□□□□□ -0.59
VPS28-216ENST00000533806 EDARQ9UNE0 448 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 FAM32AQ9Y421 112 aaKnown RBP11.34□□□□□ -0.59
VPS28-216ENST00000533806 RNF115Q9Y4L5 304 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 V9GYQ6 96 aa11.34□□□□□ -0.59
VPS28-216ENST00000533806 CADP27708 2225 aa11.33□□□□□ -0.59
VPS28-216ENST00000533806 RAI1Q7Z5J4 1906 aaPredicted RBP11.33□□□□□ -0.6
VPS28-216ENST00000533806 ZNF503-AS2A6NEH8 195 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 CENPBD1B2RD01 187 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 HS3ST1O14792 307 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 CLOCKO15516 846 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 PTP4A3O75365 173 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 SERPINI2O75830 405 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 PDE5AO76074 875 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 BCL10O95999 233 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 IGHMP01871 453 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 CD3EP07766 207 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 DNASE1P24855 282 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 PTAFRP25105 342 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 CD40P25942 277 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 OMPP47874 163 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 SLC9A3P48764 834 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 ZNF83P51522 516 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 HMGA2P52926 109 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 MELKQ14680 651 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 C3orf36Q3SXR2 165 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 ZNF672Q499Z4 452 aaPredicted RBP11.33□□□□□ -0.6
VPS28-216ENST00000533806 MTX3Q5HYI7 312 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 TMEM108Q6UXF1 575 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 C20orf204Q6ZNR8 217 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 OAFQ86UD1 273 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 ASB10Q8WXI3 467 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 NEUROG1Q92886 237 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 ZNF566Q969W8 418 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 ALPK1Q96QP1 1244 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 GPA33Q99795 319 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 C1QTNF6Q9BXI9 259 aa11.33□□□□□ -0.6
VPS28-216ENST00000533806 TXNIPQ9H3M7 391 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms