RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 DBIP07108 87 aaKnown RBP12.97□□□□□ -0.33
USP48-213ENST00000529637 ARF3P61204 181 aaPredicted RBP12.97□□□□□ -0.33
USP48-213ENST00000529637 NNATQ16517 81 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 DEFB110Q30KQ9 67 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 TSSK4Q6SA08 328 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 SFTPA2Q8IWL1 248 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 OR2L13Q8N349 312 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 OR4C16Q8NGL9 310 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 TNFAIP8L1Q8WVP5 186 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 PTCHD1Q96NR3 888 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 OR2A5Q96R48 311 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 SLC25A32Q9H2D1 315 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 TMEM27Q9HBJ8 222 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 AKAP7Q9P0M2 348 aaPredicted RBP12.97□□□□□ -0.33
USP48-213ENST00000529637 NDRG3Q9UGV2 375 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 KCNK7Q9Y2U2 307 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 DOCK8Q8NF50 2099 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 UBE2QL1A1L167 161 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 DISC1C4P0D8 188 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 LINC01565O15544 149 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 RCBTB2O95199 551 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 HOXB1P14653 301 aaPredicted RBP12.96□□□□□ -0.33
USP48-213ENST00000529637 COL9A1P20849 921 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 LUMP51884 338 aaPredicted RBP12.96□□□□□ -0.33
USP48-213ENST00000529637 PCGF3Q3KNV8 242 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 S100A16Q96FQ6 103 aaKnown RBP12.96□□□□□ -0.33
USP48-213ENST00000529637 TSNAXQ99598 290 aaKnown RBP12.96□□□□□ -0.33
USP48-213ENST00000529637 TSPAN10Q9H1Z9 355 aaPredicted RBP12.96□□□□□ -0.33
USP48-213ENST00000529637 ARID1BQ8NFD5 2236 aaPredicted RBP12.96□□□□□ -0.33
USP48-213ENST00000529637 C2orf16Q68DN1 1984 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 SEC16AO15027 2179 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 ADAM11O75078 769 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 SERPINA3P01011 423 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 KIR2DL1P43626 348 aaPredicted RBP12.96□□□□□ -0.33
USP48-213ENST00000529637 MECP2P51608 486 aaKnown RBP12.96□□□□□ -0.33
USP48-213ENST00000529637 TAS2R20P59543 309 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 GUCA2AQ02747 115 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 DUSP8Q13202 625 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 FAM209BQ5JX69 171 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 MANEAQ5SRI9 462 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 HAGHLQ6PII5 290 aaPredicted RBP12.96□□□□□ -0.33
USP48-213ENST00000529637 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.96□□□□□ -0.33
USP48-213ENST00000529637 LURAP1LQ8IV03 231 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 TMEM52Q8NDY8 209 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 DUSP19Q8WTR2 217 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 FAM3CQ92520 227 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 DVL3Q92997 716 aaPredicted RBP12.96□□□□□ -0.33
USP48-213ENST00000529637 ZFYVE21Q9BQ24 234 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 SIGLEC7Q9Y286 467 aa12.96□□□□□ -0.33
USP48-213ENST00000529637 ZNF749O43361 778 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 CNR1P21554 472 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 GRPRP30550 384 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 PBX2P40425 430 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 EEF1A1P68104 462 aaKnown RBP12.96□□□□□ -0.34
USP48-213ENST00000529637 TFF2Q03403 129 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 RIPPLY1Q0D2K3 151 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 MAMSTRQ6ZN01 415 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 MOB3CQ70IA8 216 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 SDR9C7Q8NEX9 313 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 SLC19A3Q9BZV2 496 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 TMEM185BQ9H7F4 350 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 HRASLS2Q9NWW9 162 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 SLC35A3Q9Y2D2 325 aa12.96□□□□□ -0.34
USP48-213ENST00000529637 OR6C68A6NDL8 312 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 ITGA10O75578 1167 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 AKR7A3O95154 331 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 POU2F2P09086 479 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 SPP1P10451 314 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 NID1P14543 1247 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 NANOS3P60323 173 aaKnown RBP12.95□□□□□ -0.34
USP48-213ENST00000529637 SRSF5Q13243 272 aaKnown RBP12.95□□□□□ -0.34
USP48-213ENST00000529637 NFATC4Q14934 902 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 KIR2DS3Q14952 304 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 ZAR1Q86SH2 424 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 ZNF546Q86UE3 836 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 OR51S1Q8NGJ8 323 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 SNX33Q8WV41 574 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 MEPEQ9NQ76 525 aaPredicted RBP12.95□□□□□ -0.34
USP48-213ENST00000529637 KCNE5Q9UJ90 142 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 C19orf53Q9UNZ5 99 aaPredicted RBP12.95□□□□□ -0.34
USP48-213ENST00000529637 SLC22A7Q9Y694 548 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 GP1BAP07359 652 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 RPA2P15927 270 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 EN2P19622 333 aaPredicted RBP12.95□□□□□ -0.34
USP48-213ENST00000529637 ITPKBP27987 946 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 STARP49675 285 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 SRSF3P84103 164 aaKnown RBP12.95□□□□□ -0.34
USP48-213ENST00000529637 SCRN3Q0VDG4 424 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 CEBPEQ15744 281 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 AMZ1Q400G9 498 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 LRRC37A5PQ49AS3 106 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 C9orf50Q5SZB4 431 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 CDRT4Q8N9R6 151 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 OR1S2Q8NGQ3 325 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 RGP1Q92546 391 aaPredicted RBP12.95□□□□□ -0.34
USP48-213ENST00000529637 TNFRSF13CQ96RJ3 184 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 TRPV4Q9HBA0 871 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 SLC22A11Q9NSA0 550 aa12.95□□□□□ -0.34
USP48-213ENST00000529637 MUC22E2RYF6 1773 aaPredicted RBP12.94□□□□□ -0.34
USP48-213ENST00000529637 TRAV20A0A0B4J274 112 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms