RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 LPAR2Q9HBW0 351 aa20.23■□□□□ 0.83
CPSF1-202ENST00000527827 ZNF275Q9NSD4 429 aaPredicted RBP20.23■□□□□ 0.83
CPSF1-202ENST00000527827 FZR1Q9UM11 496 aa20.23■□□□□ 0.83
CPSF1-202ENST00000527827 POFUT2Q9Y2G5 429 aa20.23■□□□□ 0.83
CPSF1-202ENST00000527827 CORINQ9Y5Q5 1042 aa20.23■□□□□ 0.83
CPSF1-202ENST00000527827 NOX1Q9Y5S8 564 aa20.23■□□□□ 0.83
CPSF1-202ENST00000527827 TPST1O60507 370 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 MSMBP08118 114 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 SAGP10523 405 aaPredicted RBP20.22■□□□□ 0.83
CPSF1-202ENST00000527827 GIPRP48546 466 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 RAB1AP62820 205 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 GLIPR1L2Q4G1C9 344 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 CEP85LQ5SZL2 805 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 FAM91A1Q658Y4 838 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 ULK3Q6PHR2 472 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 DHRS4L2Q6PKH6 230 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 SLC2A7Q6PXP3 512 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 SCAIQ8N9R8 606 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 MOGAT1Q96PD6 335 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 RAD21L1Q9H4I0 556 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 DENND2DQ9H6A0 471 aaPredicted RBP20.22■□□□□ 0.83
CPSF1-202ENST00000527827 B3GAT2Q9NPZ5 323 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 TREM2Q9NZC2 230 aa20.22■□□□□ 0.83
CPSF1-202ENST00000527827 C5orf58C9J3I9 102 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 UBDO15205 165 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 NCR1O76036 304 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 TFP02787 698 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 LMO4P61968 165 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 CAMK2DQ13557 499 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 GKAP1Q5VSY0 366 aaPredicted RBP20.21■□□□□ 0.83
CPSF1-202ENST00000527827 C10orf111Q8N326 155 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 NFKBIDQ8NI38 313 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 SLC47A1Q96FL8 570 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 FOXB1Q99853 325 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 ASPNQ9BXN1 380 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 ULBP2Q9BZM5 246 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 SLC25A37Q9NYZ2 338 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.21■□□□□ 0.83
CPSF1-202ENST00000527827 GRIP1Q9Y3R0 1128 aa20.21■□□□□ 0.83
CPSF1-202ENST00000527827 V9GYY5 206 aaPredicted RBP20.21■□□□□ 0.83
CPSF1-202ENST00000527827 GAAP10253 952 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 ARAFP10398 606 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 TMEM33P57088 247 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 RPS23P62266 143 aaKnown RBP20.2■□□□□ 0.82
CPSF1-202ENST00000527827 GALK2Q01415 458 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 PUDPQ08623 228 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 RAB39AQ14964 217 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 REP15Q6BDI9 236 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 ZNF584Q8IVC4 421 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 MSRB3Q8IXL7 192 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 MIER2Q8N344 545 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 OR6N1Q8NGY5 312 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 FGFBP3Q8TAT2 258 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 LRRC37BQ96QE4 947 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 WFDC6Q9BQY6 131 aa20.2■□□□□ 0.82
CPSF1-202ENST00000527827 MRPL39Q9NYK5 338 aaKnown RBP20.2■□□□□ 0.82
CPSF1-202ENST00000527827 A0A0B4J2E0 115 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 A0A1B0GX12 115 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 LRRN3E7EW58 273 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 WIPF1O43516 503 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 TPST2O60704 377 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 RP2O75695 350 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 RAB36O95755 333 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 NAT2P11245 290 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 MRPS11P82912 194 aaKnown RBP20.19■□□□□ 0.82
CPSF1-202ENST00000527827 PMS2P3Q13401 168 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 OR1Q1Q15612 314 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 RNF217Q8TC41 542 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 TRIM44Q96DX7 344 aaPredicted RBP20.19■□□□□ 0.82
CPSF1-202ENST00000527827 EPYCQ99645 322 aa20.19■□□□□ 0.82
CPSF1-202ENST00000527827 TESQ9UGI8 421 aaKnown RBP20.19■□□□□ 0.82
CPSF1-202ENST00000527827 TMEM120BA0PK00 339 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 ZNF726A6NNF4 738 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 PLPP3O14495 311 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 PPIHO43447 177 aaKnown RBP20.18■□□□□ 0.82
CPSF1-202ENST00000527827 RGS9O75916 674 aaPredicted RBP20.18■□□□□ 0.82
CPSF1-202ENST00000527827 UBL3O95164 117 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 PATE4P0C8F1 98 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 COMPP49747 757 aaPredicted RBP20.18■□□□□ 0.82
CPSF1-202ENST00000527827 GCNT6Q5T4J0 391 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 REEP3Q6NUK4 255 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 THSD4Q6ZMP0 1018 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 PXKQ7Z7A4 578 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 SNX32Q86XE0 403 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 SKA3Q8IX90 412 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 GOLGA6L1Q8N7Z2 621 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 OR51F2Q8NH61 342 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 MGARPQ8TDB4 240 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 ZNF385DQ9H6B1 395 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 SLAMF8Q9P0V8 285 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 SLC7A8Q9UHI5 535 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 DUSP13Q9UII6 198 aa20.18■□□□□ 0.82
CPSF1-202ENST00000527827 SPRY1O43609 319 aaPredicted RBP20.17■□□□□ 0.82
CPSF1-202ENST00000527827 SERPINI2O75830 405 aa20.17■□□□□ 0.82
CPSF1-202ENST00000527827 RGS8P57771 180 aaPredicted RBP20.17■□□□□ 0.82
CPSF1-202ENST00000527827 CDK6Q00534 326 aa20.17■□□□□ 0.82
CPSF1-202ENST00000527827 SHQ1Q6PI26 577 aaKnown RBP20.17■□□□□ 0.82
CPSF1-202ENST00000527827 WDR88Q6ZMY6 472 aa20.17■□□□□ 0.82
CPSF1-202ENST00000527827 C1orf229Q6ZS94 237 aaPredicted RBP20.17■□□□□ 0.82
CPSF1-202ENST00000527827 TMEM43Q9BTV4 400 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms