RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 MED31Q9Y3C7 131 aa17.98■□□□□ 0.47
VPS28-206ENST00000526734 C2CD3Q4AC94 2353 aa17.98■□□□□ 0.47
VPS28-206ENST00000526734 A0A096LPE4 126 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 A0A1W2PPZ6 126 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 GMNCA6NCL1 334 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 C11orf98E9PRG8 122 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 ATP6V1G2-DDX39BF2Z307 99 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 CXCR6O00574 342 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 NME4O00746 187 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 RNF13O43567 381 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 OR7A10O76100 309 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 IFNW1P05000 195 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 IFNGR1P15260 489 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 TNFRSF1BP20333 461 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 APOBEC3AP31941 199 aaPredicted RBP17.97■□□□□ 0.47
VPS28-206ENST00000526734 OR1E2P47887 323 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 BIDP55957 195 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 PIN1Q13526 163 aaPredicted RBP17.97■□□□□ 0.47
VPS28-206ENST00000526734 IL17RDQ8NFM7 739 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 GEMIN6Q8WXD5 167 aaKnown RBP17.97■□□□□ 0.47
VPS28-206ENST00000526734 SGTBQ96EQ0 304 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 TXNDC15Q96J42 360 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 DENND2DQ9H6A0 471 aaPredicted RBP17.97■□□□□ 0.47
VPS28-206ENST00000526734 STX18Q9P2W9 335 aaKnown RBP17.97■□□□□ 0.47
VPS28-206ENST00000526734 ABCD2Q9UBJ2 740 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 MOKQ9UQ07 419 aa17.97■□□□□ 0.47
VPS28-206ENST00000526734 USF3Q68DE3 2245 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 CENPBD1B2RD01 187 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 H7C417 338 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 SERPINI2O75830 405 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 PDE5AO76074 875 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 DRD4P21917 467 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 GSK3BP49841 420 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 NAAAQ02083 359 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 CAMK2DQ13557 499 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 CLEC12BQ2HXU8 276 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 NKAIN4Q8IVV8 208 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 OR4F15Q8NGB8 312 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 TMEM255BQ8WV15 326 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 ZNF566Q969W8 418 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 SLC25A44Q96H78 314 aaPredicted RBP17.96■□□□□ 0.47
VPS28-206ENST00000526734 FAM107BQ9H098 131 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 SPAG4Q9NPE6 437 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 FBXO9Q9UK97 447 aaPredicted RBP17.96■□□□□ 0.47
VPS28-206ENST00000526734 FBXL3Q9UKT7 428 aa17.96■□□□□ 0.47
VPS28-206ENST00000526734 TRIM64A6NGJ6 449 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 TRIM64BA6NI03 449 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 NPIPB13A6NJU9 1138 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 NPIPB4C9JG80 1138 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 BCL10O95999 233 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 CECR9P0C854 216 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 UGT2B15P54855 530 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 IFI44LQ53G44 452 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 PHYHD1Q5SRE7 291 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 CLEC9AQ6UXN8 241 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 ZNF813Q6ZN06 617 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 CBLL1Q75N03 491 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 OFCC1Q8IZS5 231 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 LRRC17Q8N6Y2 441 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 TMEM54Q969K7 222 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 ZNF837Q96EG3 531 aaPredicted RBP17.95■□□□□ 0.46
VPS28-206ENST00000526734 FOXB1Q99853 325 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 KCTD14Q9BQ13 255 aaPredicted RBP17.95■□□□□ 0.46
VPS28-206ENST00000526734 CACNG6Q9BXT2 260 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 GLTPQ9NZD2 209 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 PMF1-BGLAPU3KQ54 211 aa17.95■□□□□ 0.46
VPS28-206ENST00000526734 A0A1W2PRG6 482 aa17.94■□□□□ 0.46
VPS28-206ENST00000526734 SHOX2O60902 331 aaPredicted RBP17.94■□□□□ 0.46
VPS28-206ENST00000526734 ZNF682O95780 498 aa17.94■□□□□ 0.46
VPS28-206ENST00000526734 IGHV4-39P01824 125 aa17.94■□□□□ 0.46
VPS28-206ENST00000526734 IGHG1P01857 330 aa17.94■□□□□ 0.46
VPS28-206ENST00000526734 HEXAP06865 529 aa17.94■□□□□ 0.46
VPS28-206ENST00000526734 FUT1P19526 365 aa17.94■□□□□ 0.46
VPS28-206ENST00000526734 DAP3P51398 398 aaKnown RBP17.94■□□□□ 0.46
VPS28-206ENST00000526734 PSME3P61289 254 aa17.94■□□□□ 0.46
VPS28-206ENST00000526734 PIWIL3Q7Z3Z3 882 aaKnown RBP17.94■□□□□ 0.46
VPS28-206ENST00000526734 PFN4Q8NHR9 129 aa17.94■□□□□ 0.46
VPS28-206ENST00000526734 GSX1Q9H4S2 264 aaPredicted RBP17.94■□□□□ 0.46
VPS28-206ENST00000526734 RPS6KA6Q9UK32 745 aa17.94■□□□□ 0.46
VPS28-206ENST00000526734 A4GNTQ9UNA3 340 aa17.94■□□□□ 0.46
VPS28-206ENST00000526734 PLCE1Q9P212 2302 aa17.94■□□□□ 0.46
VPS28-206ENST00000526734 VSTM5A8MXK1 200 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 BLOC1S5-TXNDC5H3BN57 136 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 TSPAN19P0C672 248 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 NR2C1P13056 603 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 CAPZA2P47755 286 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 DSCR9P59020 149 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 TUBA1BP68363 451 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 TUBA4AP68366 448 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 RPL18Q07020 188 aaKnown RBP17.93■□□□□ 0.46
VPS28-206ENST00000526734 TRAM2Q15035 370 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 GSG1Q2KHT4 349 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 ANKDD1AQ495B1 522 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 TUBA1AQ71U36 451 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 FKBP9P1Q75LS8 142 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 DPPA2Q7Z7J5 298 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 NUP37Q8NFH4 326 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 FAM162AQ96A26 154 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 FNDC11Q9BVV2 318 aa17.93■□□□□ 0.46
VPS28-206ENST00000526734 INIPQ9NRY2 104 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms