RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	NPAT	Q14207	1427 aa		3.07	□□□□□ -1.92
CD44-223	ENST00000526553	AGL	P35573	1532 aa		3.07	□□□□□ -1.92
CD44-223	ENST00000526553	KDM5C	P41229	1560 aa		3.07	□□□□□ -1.92
CD44-223	ENST00000526553	CDC42BPA	Q5VT25	1732 aa		3.07	□□□□□ -1.92
CD44-223	ENST00000526553	LRRIQ1	Q96JM4	1722 aa		3.07	□□□□□ -1.92
CD44-223	ENST00000526553	STRCP1	A6NGW2	1772 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	GFY	I3L273	518 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	SOX15	O60248	233 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	MEGF6	O75095	1541 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	OR7A10	O76100	309 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	SNAPIN	O95295	136 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	STAMBP	O95630	424 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	FTH1	P02794	183 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	GAPDH	P04406	335 aa	Known RBP	3.06	□□□□□ -1.92
CD44-223	ENST00000526553		P04436	131 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	C2	P06681	752 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	FGF4	P08620	206 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	ZNF853	P0CG23	659 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	ANXA8	P13928	327 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	NPR2	P20594	1047 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	CMA1	P23946	247 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	DNMT1	P26358	1616 aa	Known RBP	3.06	□□□□□ -1.92
CD44-223	ENST00000526553	SHMT2	P34897	504 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	PEX19	P40855	299 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	KIR2DS4	P43632	304 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	GPM6A	P51674	278 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	ACLY	P53396	1101 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	CDH6	P55285	790 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	ERVK-25	P63136	954 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	PLA2R1	Q13018	1463 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	IL17A	Q16552	155 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	EOGT	Q5NDL2	527 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	ANXA8L1	Q5VT79	327 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	UNQ9370/PRO34162	Q6UXP9	181 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	SLC25A48	Q6ZT89	311 aa	Known RBP	3.06	□□□□□ -1.92
CD44-223	ENST00000526553	PREX2	Q70Z35	1606 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	TMEM179B	Q7Z7N9	219 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	VRK2	Q86Y07	508 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	BBS1	Q8NFJ9	593 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	FAM81A	Q8TBF8	368 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	ELMO1	Q92556	727 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	NEIL2	Q969S2	332 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	MBOAT4	Q96T53	435 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	ZNF184	Q99676	751 aa	Predicted RBP	3.06	□□□□□ -1.92
CD44-223	ENST00000526553	CNPY3	Q9BT09	278 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	GLRX2	Q9NS18	164 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	RERE	Q9P2R6	1566 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	MLH3	Q9UHC1	1453 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	BTNL2	Q9UIR0	455 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	PSME2	Q9UL46	239 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	STAP1	Q9ULZ2	295 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	UBQLN1	Q9UMX0	589 aa	Known RBP	3.06	□□□□□ -1.92
CD44-223	ENST00000526553		V9GY05	133 aa		3.06	□□□□□ -1.92
CD44-223	ENST00000526553	IQGAP1	P46940	1657 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	ABCC1	P33527	1531 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	TCOF1	Q13428	1488 aa	Known RBP	3.05	□□□□□ -1.92
CD44-223	ENST00000526553	TRO	Q12816	1431 aa	Predicted RBP	3.05	□□□□□ -1.92
CD44-223	ENST00000526553	NINL	Q9Y2I6	1382 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	SERTM2	A0A1B0GWG4	89 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	TUBAL3	A6NHL2	446 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	TRIM49D1	C9J1S8	452 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	CTAG2	O75638	210 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	ERLIN2	O94905	339 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	ZNF24	P17028	368 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	UCN	P55089	124 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	RPS15	P62841	145 aa	Known RBP	3.05	□□□□□ -1.92
CD44-223	ENST00000526553	PPIL2	Q13356	520 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	ORC2	Q13416	577 aa	Predicted RBP	3.05	□□□□□ -1.92
CD44-223	ENST00000526553	TGFBI	Q15582	683 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	MARCH8	Q5T0T0	291 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	GPRC6A	Q5T6X5	926 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	OR2G6	Q5TZ20	316 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	LUZP2	Q86TE4	346 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	LINC01555	Q8NAE3	123 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	SDR9C7	Q8NEX9	313 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	CCDC148	Q8NFR7	591 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	OR10H4	Q8NGA5	316 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	PIBF1	Q8WXW3	757 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	OR1E3	Q8WZA6	343 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	SH3GL1	Q99961	368 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	MRPL45	Q9BRJ2	306 aa	Known RBP	3.05	□□□□□ -1.92
CD44-223	ENST00000526553	C11orf70	Q9BRQ4	267 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	GBA3	Q9H227	469 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	RANBP3	Q9H6Z4	567 aa	Predicted RBP	3.05	□□□□□ -1.92
CD44-223	ENST00000526553	ZDHHC11	Q9H8X9	412 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	ZNF160	Q9HCG1	818 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	DDX18	Q9NVP1	670 aa	Known RBP	3.05	□□□□□ -1.92
CD44-223	ENST00000526553	GIN1	Q9NXP7	522 aa		3.05	□□□□□ -1.92
CD44-223	ENST00000526553	XIRP1	Q702N8	1843 aa	Known RBP	3.05	□□□□□ -1.92
CD44-223	ENST00000526553	ADGB	Q8N7X0	1667 aa		3.04	□□□□□ -1.92
CD44-223	ENST00000526553	RNF17	Q9BXT8	1623 aa	Known RBP	3.04	□□□□□ -1.92
CD44-223	ENST00000526553	SAMD9L	Q8IVG5	1584 aa		3.04	□□□□□ -1.92
CD44-223	ENST00000526553	VWDE	Q8N2E2	1590 aa		3.04	□□□□□ -1.92
CD44-223	ENST00000526553	NEURL4	Q96JN8	1562 aa		3.04	□□□□□ -1.92
CD44-223	ENST00000526553	A2ML1	A8K2U0	1454 aa		3.04	□□□□□ -1.92
CD44-223	ENST00000526553	A2M	P01023	1474 aa		3.04	□□□□□ -1.92
CD44-223	ENST00000526553	NPHP4	O75161	1426 aa	Predicted RBP	3.04	□□□□□ -1.92
CD44-223	ENST00000526553	USP47	Q96K76	1375 aa		3.04	□□□□□ -1.92
CD44-223	ENST00000526553	WDR19	Q8NEZ3	1342 aa		3.04	□□□□□ -1.92
CD44-223	ENST00000526553	IGHV3OR16-13	A0A075B7E8	117 aa		3.04	□□□□□ -1.92

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