RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 GAL3ST2Q9H3Q3 398 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 RIBC2Q9H4K1 309 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 NARFLQ9H6Q4 476 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 ZNF665Q9H7R5 613 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 RMND5AQ9H871 391 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 COG4Q9H9E3 785 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 SIAEQ9HAT2 523 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 ADAP2Q9NPF8 381 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 IFT46Q9NQC8 304 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 CTPS2Q9NRF8 586 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 DDX19AQ9NUU7 478 aaKnown RBP1.47□□□□□ -2.17
NUP54-208ENST00000508604 THUMPD1Q9NXG2 353 aaKnown RBP1.47□□□□□ -2.17
NUP54-208ENST00000508604 COA4Q9NYJ1 87 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 RBAKQ9NYW8 714 aaPredicted RBP1.47□□□□□ -2.17
NUP54-208ENST00000508604 TRPC4Q9UBN4 977 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 CTSFQ9UBX1 484 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 DCDC2Q9UHG0 476 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 BTNL2Q9UIR0 455 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 LEF1Q9UJU2 399 aaPredicted RBP1.47□□□□□ -2.17
NUP54-208ENST00000508604 ERVW-1Q9UQF0 538 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 MRPS7Q9Y2R9 242 aaKnown RBP1.47□□□□□ -2.17
NUP54-208ENST00000508604 UTP11Q9Y3A2 253 aaKnown RBP1.47□□□□□ -2.17
NUP54-208ENST00000508604 HYOU1Q9Y4L1 999 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 SLC22A7Q9Y694 548 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 WSB1Q9Y6I7 421 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 CLCA3PQ9Y6N3 262 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 CHD1O14646 1710 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 CDC42BPAQ5VT25 1732 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 NID2Q14112 1375 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 JCADQ9P266 1359 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 MED23Q9ULK4 1368 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 MYH13Q9UKX3 1938 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 SYNMO15061 1565 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 MN1Q10571 1320 aaPredicted RBP1.46□□□□□ -2.17
NUP54-208ENST00000508604 ZNF532Q9HCE3 1301 aa1.46□□□□□ -2.17
NUP54-208ENST00000508604 NAV1Q8NEY1 1877 aa1.46□□□□□ -2.17
NUP54-208ENST00000508604 DISP1Q96F81 1524 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 LAMC1P11047 1609 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 A0A0A6YYH2 397 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ARHGAP42A6NI28 874 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 A6NJ64 397 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 SMIM23A6NLE4 172 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ZNF716A6NP11 495 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 E7ESA3 106 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 LOC110117498-PIK3R3F6TDL0 507 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 JAK2O60674 1132 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 DPM1O60762 260 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 MTX2O75431 263 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 RHOBTB1O94844 696 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CCNE2O96020 404 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 F10P00742 488 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 OAS1P00973 400 aaKnown RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 AGTP01019 485 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 IFNGP01579 166 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CDK1P06493 297 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 FCER2P06734 321 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CRHP06850 196 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 FBP1P09467 338 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CD3GP09693 182 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CTXN2P0C2S0 81 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ZDHHC11BP0C7U3 371 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ZNF735P0CB33 412 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 HSPD1P10809 573 aaKnown RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 CCNB1P14635 433 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 B4GALT1P15291 398 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TNNI3P19429 210 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CCNOP22674 350 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 PSMB6P28072 239 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 RCVRNP35243 200 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 UGT1A3P35503 534 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 SOAT1P35610 550 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 UGT2B10P36537 528 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ATP5C1P36542 298 aaKnown RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 ACTR1BP42025 376 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 MAGEA2P43356 314 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TPMTP51580 245 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 UCP2P55851 309 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CLDN8P56748 225 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 C21orf59P57076 290 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 KRTAP12-4P60329 112 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ARF6P62330 175 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 VSNL1P62760 191 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 GALK2Q01415 458 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 DEFA6Q01524 100 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TNFRSF17Q02223 184 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 SLC3A1Q07837 685 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ARHGAP1Q07960 439 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 STX4Q12846 297 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 MERTKQ12866 999 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 LCP2Q13094 533 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 IL18Q14116 193 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 OXA1LQ15070 435 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 PDK1Q15118 436 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 PDK2Q15119 407 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CDK10Q15131 360 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ZNHIT3Q15649 155 aaPredicted RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 TOMM34Q15785 309 aaPredicted RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 STXBP2Q15833 593 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 EOGTQ5NDL2 527 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ATF7IP2Q5U623 682 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms