RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 PHF3Q92576 2039 aaKnown RBP10.53□□□□□ -0.72
CUX1-210ENST00000497815 NBASA2RRP1 2371 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 TEX13CA0A0J9YWL9 993 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 H7C1C5 153 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 M0R3G1 203 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 SOCS2O14508 198 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 EI24O14681 340 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 MSTNO14793 375 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 UPK3AO75631 287 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 ZNF432O94892 652 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 TP53P04637 393 aaPredicted RBP10.52□□□□□ -0.73
CUX1-210ENST00000497815 AGAP20933 346 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 IGFBP5P24593 272 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 ACVR1BP36896 505 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 ASCL1P50553 236 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 RPL27P61353 136 aaKnown RBP10.52□□□□□ -0.73
CUX1-210ENST00000497815 LCN6P62502 163 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 RUNX1T1Q06455 604 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 FAPQ12884 760 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 COX10Q12887 443 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 LRRC36Q1X8D7 754 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 ARMC4Q5T2S8 1044 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 C9orf135Q5VTT2 229 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 RPL13AP3Q6NVV1 102 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 ZNF474Q6S9Z5 364 aaPredicted RBP10.52□□□□□ -0.73
CUX1-210ENST00000497815 CD300LDQ6UXZ3 194 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 DPY19L2P2Q6ZN68 376 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 TMEM123Q8N131 208 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 GPR137CQ8N3F9 429 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 CBR4Q8N4T8 237 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 IQCF1Q8N6M8 205 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 SYT14Q8NB59 555 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 OR6N1Q8NGY5 312 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 OR6X1Q8NH79 312 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 TEX47Q8TBZ9 253 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 MAGEE2Q8TD90 523 aaPredicted RBP10.52□□□□□ -0.73
CUX1-210ENST00000497815 ZNF566Q969W8 418 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 RASD2Q96D21 266 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 Q96M85 177 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 ADAD1Q96M93 576 aaKnown RBP10.52□□□□□ -0.73
CUX1-210ENST00000497815 ZNF570Q96NI8 536 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 ERMAPQ96PL5 475 aaPredicted RBP10.52□□□□□ -0.73
CUX1-210ENST00000497815 ALKBH3Q96Q83 286 aaPredicted RBP10.52□□□□□ -0.73
CUX1-210ENST00000497815 C9orf16Q9BUW7 83 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 RBM24Q9BX46 236 aaKnown RBP10.52□□□□□ -0.73
CUX1-210ENST00000497815 SLCO5A1Q9H2Y9 848 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 DCLRE1BQ9H816 532 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 NRIP3Q9NQ35 241 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 SLC7A10Q9NS82 523 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 JKAMPQ9P055 326 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 UPB1Q9UBR1 384 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 REV1Q9UBZ9 1251 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 NKX1-2Q9UD57 310 aaPredicted RBP10.52□□□□□ -0.73
CUX1-210ENST00000497815 POFUT2Q9Y2G5 429 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 POLEQ07864 2286 aa10.52□□□□□ -0.73
CUX1-210ENST00000497815 DOCK7Q96N67 2140 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 A1L4Q6 167 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 CLEC18AA5D8T8 446 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 WIPF3A6NGB9 483 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 A8MXE2 369 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 ARHGEF9O43307 516 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 IGHMP01871 453 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 OSMP13725 252 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 ACADSP16219 412 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 NOS3P29474 1203 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 CSNK1A1P48729 337 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 RPS6KA3P51812 740 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 CLRN1P58418 232 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 PPP2R2BQ00005 443 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 KRR1Q13601 381 aaKnown RBP10.51□□□□□ -0.73
CUX1-210ENST00000497815 DAG1Q14118 895 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 TSC22D1Q15714 1073 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 PHYHD1Q5SRE7 291 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 SLC35F1Q5T1Q4 408 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 FBXW9Q5XUX1 488 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 LPCAT4Q643R3 524 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 KDM4DQ6B0I6 523 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 CLEC18BQ6UXF7 455 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 CLDN22Q8N7P3 220 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 CLEC18CQ8NCF0 446 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 NOXO1Q8NFA2 376 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 DNAJC9Q8WXX5 260 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 HDAC2Q92769 488 aaKnown RBP10.51□□□□□ -0.73
CUX1-210ENST00000497815 SLC25A44Q96H78 314 aaPredicted RBP10.51□□□□□ -0.73
CUX1-210ENST00000497815 GPX7Q96SL4 187 aaPredicted RBP10.51□□□□□ -0.73
CUX1-210ENST00000497815 RBM4BQ9BQ04 359 aaKnown RBP10.51□□□□□ -0.73
CUX1-210ENST00000497815 RBM4Q9BWF3 364 aaKnown RBP10.51□□□□□ -0.73
CUX1-210ENST00000497815 OSBPL10Q9BXB5 764 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 RIBC2Q9H4K1 309 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 GALNT8Q9NY28 637 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 IL20Q9NYY1 176 aa10.51□□□□□ -0.73
CUX1-210ENST00000497815 STX18Q9P2W9 335 aaKnown RBP10.51□□□□□ -0.73
CUX1-210ENST00000497815 TMEFF2Q9UIK5 374 aaPredicted RBP10.51□□□□□ -0.73
CUX1-210ENST00000497815 UBR5O95071 2799 aaPredicted RBP10.5□□□□□ -0.73
CUX1-210ENST00000497815 A6NIZ1 184 aa10.5□□□□□ -0.73
CUX1-210ENST00000497815 NPIPB13A6NJU9 1138 aa10.5□□□□□ -0.73
CUX1-210ENST00000497815 NPIPB4C9JG80 1138 aa10.5□□□□□ -0.73
CUX1-210ENST00000497815 ZNF587BE7ETH6 402 aa10.5□□□□□ -0.73
CUX1-210ENST00000497815 XKRYO14609 159 aa10.5□□□□□ -0.73
CUX1-210ENST00000497815 TRMUO75648 421 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms