RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 NR2F1P10589 423 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 B4GALT1P15291 398 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 KRT4P19013 534 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 ALDH3A1P30838 453 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 LCN2P80188 198 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 MFSD13AQ14CX5 517 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 SLC9A3R2Q15599 337 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 CHI3L2Q15782 390 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 ALKBH6Q3KRA9 238 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 KLF17Q5JT82 389 aaPredicted RBP12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 FAM69AQ5T7M9 428 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 C6orf89Q6UWU4 347 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 USP51Q70EK9 711 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 ZNF584Q8IVC4 421 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 OR52P1PQ8NH57 321 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 SYNPRQ8TBG9 265 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 WFDC12Q8WWY7 111 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 TRIM44Q96DX7 344 aaPredicted RBP12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 KTI12Q96EK9 354 aaPredicted RBP12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 CCDC115Q96NT0 180 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 FOXB1Q99853 325 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 PKP2Q99959 881 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 PPCSQ9HAB8 311 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 SAP30LQ9HAJ7 183 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 DECR2Q9NUI1 292 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 BTNL2Q9UIR0 455 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 LEF1Q9UJU2 399 aaPredicted RBP12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 PURGQ9UJV8 347 aaKnown RBP12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 POFUT2Q9Y2G5 429 aa12.09□□□□□ -0.47
PRPF40A-211ENST00000493468 M0R082 166 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 CLPTM1O96005 669 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 C1QCP02747 245 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 MT-ND5P03915 603 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 NCF2P19878 526 aaPredicted RBP12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 CAMK2DQ13557 499 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 RAB39AQ14964 217 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 MAPK11Q15759 364 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 MOGQ16653 247 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 ATG16L1Q676U5 607 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 LEG1Q6P5S2 330 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 C9orf139Q6ZV77 190 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 H1FNTQ75WM6 255 aaPredicted RBP12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 VRK2Q86Y07 508 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 TRIML2Q8N7C3 387 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 ZNF417Q8TAU3 575 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 ZNF519Q8TB69 540 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 PNPT1Q8TCS8 783 aaKnown RBP12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 ST7LQ8TDW4 575 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 SLC35B4Q969S0 331 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 TMIGD2Q96BF3 282 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 ELMOD3Q96FG2 381 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 TSPAN32Q96QS1 320 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 ZNF587Q96SQ5 575 aaPredicted RBP12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 C12orf10Q9HB07 376 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 CALML5Q9NZT1 146 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 ZNF443Q9Y2A4 671 aaPredicted RBP12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 AUP1Q9Y679 476 aa12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 KMT2CQ8NEZ4 4911 aaKnown RBP12.08□□□□□ -0.48
PRPF40A-211ENST00000493468 SNAP29O95721 258 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 PRG2P13727 222 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 CLNS1AP54105 237 aaKnown RBP12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 SLC3A1Q07837 685 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 LARS2Q15031 903 aaKnown RBP12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 SPANXN4Q5MJ08 99 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 PIWIL3Q7Z3Z3 882 aaKnown RBP12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 NET1Q7Z628 596 aaPredicted RBP12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 UEVLDQ8IX04 471 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 LRRC34Q8IZ02 419 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 BCL6BQ8N143 479 aaPredicted RBP12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 C4orf33Q8N1A6 199 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 C11orf40Q8WZ69 217 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 SLC38A4Q969I6 547 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 CITED1Q99966 193 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 ULBP2Q9BZM5 246 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 C1orf198Q9H425 327 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 GRPEL1Q9HAV7 217 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 TCF7L2Q9NQB0 619 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 PDP1Q9P0J1 537 aaPredicted RBP12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 TESQ9UGI8 421 aaKnown RBP12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 GPR45Q9Y5Y3 372 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 CACNG2Q9Y698 323 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 NBEAL2Q6ZNJ1 2754 aa12.07□□□□□ -0.48
PRPF40A-211ENST00000493468 M0QZ24 198 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 TPD52L2O43399 206 aaKnown RBP12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 ENTPD5O75356 428 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 KNG1P01042 644 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 IGHMP01871 453 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 ZNF12P17014 697 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 GRPRP30550 384 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 MTNR1AP48039 350 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 AQP5P55064 265 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 RBBP4Q09028 425 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 ZNF154Q13106 437 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 ZNF362Q5T0B9 420 aaPredicted RBP12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 CARD17Q5XLA6 110 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 C16orf87Q6PH81 154 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 NHLRC1Q6VVB1 395 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 SERPINA11Q86U17 422 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 CLIP4Q8N3C7 705 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 GLB1L3Q8NCI6 653 aaPredicted RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms