RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 NIPAL2Q9H841 368 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 LY9Q9HBG7 655 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 PLGRKTQ9HBL7 147 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 SGK2Q9HBY8 427 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 INPP5EQ9NRR6 644 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 GIN1Q9NXP7 522 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 QPCTLQ9NXS2 382 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 CLCF1Q9UBD9 225 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 SLC7A8Q9UHI5 535 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 TMCO1Q9UM00 188 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 TRAF3IP3Q9Y228 551 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 KCNIP3Q9Y2W7 256 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 WIF1Q9Y5W5 379 aa1.49□□□□□ -2.17
CPSF3-205ENST00000489629 NSD2O96028 1365 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 GOLGA8OA6NCC3 632 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 RBMY1BA6NDE4 496 aaKnown RBP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 RBMY1EA6NEQ0 496 aaKnown RBP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 GOLGA8NF8WBI6 632 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 GOLGA8SH3BPF8 625 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 AIREO43918 545 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 HMMRO75330 724 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 ERLIN1O75477 346 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 UPK3AO75631 287 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 RETP07949 1114 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 RBMY1DP0C7P1 496 aaKnown RBP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 RBMY1A1P0DJD3 496 aaKnown RBP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 CMA1P23946 247 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 MNAT1P51948 309 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 PRMT2P55345 433 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 RPL23AP62750 156 aaKnown RBP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 OGDHQ02218 1023 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 GBE1Q04446 702 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 SCRN3Q0VDG4 424 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 SLAQ13239 276 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 CUL2Q13617 745 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 ZNF77Q15935 545 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 C6orf226Q5I0X4 101 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 PRAMEF20Q5VT98 475 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 C1orf94Q6P1W5 598 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 ZNF620Q6ZNG0 422 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 C19orf35Q6ZS72 473 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 COX15Q7KZN9 410 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 ASCL5Q7RTU5 278 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 H2BFWTQ7Z2G1 175 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 ZNF546Q86UE3 836 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 PAQR7Q86WK9 346 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 NUDCD3Q8IVD9 361 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 PIANPQ8IYJ0 282 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 OR2L3Q8NG85 312 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 OR51G1Q8NGK1 321 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 ACOT11Q8WXI4 607 aaPredicted RBP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 FGF14Q92915 247 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 ZNF641Q96N77 438 aaPredicted RBP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 OR2M2Q96R28 347 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 PANX2Q96RD6 677 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 CNN2Q99439 309 aaKnown RBP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 RASL11BQ9BPW5 248 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 TMEM246Q9BRR3 403 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 RIOK2Q9BVS4 552 aaKnown RBP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 FAIM2Q9BWQ8 316 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 ACTR6Q9GZN1 396 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 ROGDIQ9GZN7 287 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 SRMSQ9H3Y6 488 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 ANKRD19PQ9H560 264 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 RANBP3Q9H6Z4 567 aaPredicted RBP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 NMRAL1Q9HBL8 299 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 EML4Q9HC35 981 aaKnown RBP1.48□□□□□ -2.17
CPSF3-205ENST00000489629 CCL28Q9NRJ3 127 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 SUN2Q9UH99 717 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 MMP17Q9ULZ9 603 aa1.48□□□□□ -2.17
CPSF3-205ENST00000489629 PIKFYVEQ9Y2I7 2098 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 FANCIQ9NVI1 1328 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 IGLV3-22A0A075B6J6 115 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 A0A0G2JN53 185 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 A0A0U1RQS6 177 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 FAM240BA0A1B0GVZ2 78 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 CCDC182A6NF36 153 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 FAM47DPA6NHR8 397 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 C12orf77C9JDV5 145 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 HAS3O00219 553 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 DNALI1O14645 258 aaPredicted RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 TOM1O60784 492 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 TNFSF13O75888 250 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 OR7A10O76100 309 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 C1orf105O95561 183 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 KLF8O95600 359 aaPredicted RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 CST1P01037 141 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 PABPC4LP0CB38 370 aaKnown RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 TDGF1P13385 188 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 CRISP2P16562 243 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 NCF2P19878 526 aaPredicted RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 CD1CP29017 333 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 FMO3P31513 532 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 BTCP35070 178 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 LONP1P36776 959 aaKnown RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 FDFT1P37268 417 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 EPS15P42566 896 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 RPS9P46781 194 aaKnown RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 YAP1P46937 504 aaKnown RBP1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms