RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	ZNF708	P17019	499 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	HTR2A	P28223	471 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	CCKAR	P32238	428 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	RBM34	P42696	430 aa	Known RBP	7.74	□□□□□ -1.17
USP4-213	ENST00000488520	RPS5	P46782	204 aa	Known RBP	7.74	□□□□□ -1.17
USP4-213	ENST00000488520	ERF	P50548	548 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	CRYBA2	P53672	197 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	CLDN18	P56856	261 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	CLDN20	P56880	219 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	RAC3	P60763	192 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	KRTAP1-1	Q07627	177 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	TNK1	Q13470	666 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	SFRP5	Q5T4F7	317 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	EEF1A1P5	Q5VTE0	462 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	C1orf140	Q5VVS0	124 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	TMEM225	Q6GV28	225 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	OR2A2	Q6IF42	318 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	ZNF474	Q6S9Z5	364 aa	Predicted RBP	7.74	□□□□□ -1.17
USP4-213	ENST00000488520	PIWIL3	Q7Z3Z3	882 aa	Known RBP	7.74	□□□□□ -1.17
USP4-213	ENST00000488520	MRPL41	Q8IXM3	137 aa	Known RBP	7.74	□□□□□ -1.17
USP4-213	ENST00000488520	OR10D3	Q8NH80	312 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	TMEM171	Q8WVE6	324 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	CANT1	Q8WVQ1	401 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	CPNE4	Q96A23	557 aa	Predicted RBP	7.74	□□□□□ -1.17
USP4-213	ENST00000488520	C7orf34	Q96L11	122 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	WFDC6	Q9BQY6	131 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	TMEM43	Q9BTV4	400 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	RSRP1	Q9BUV0	290 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	ASPN	Q9BXN1	380 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	SLC19A3	Q9BZV2	496 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	ANKRD19P	Q9H560	264 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	NMNAT1	Q9HAN9	279 aa	Predicted RBP	7.74	□□□□□ -1.17
USP4-213	ENST00000488520	NDUFAF4	Q9P032	175 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	A4GNT	Q9UNA3	340 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	RNF114	Q9Y508	228 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	TCRBV3S1	A0A5B6	114 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	SLC22A20	A6NK97	555 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520		B4DXG7	233 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	C16orf97	H3BN30	126 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	KPNA4	O00629	521 aa	Predicted RBP	7.73	□□□□□ -1.17
USP4-213	ENST00000488520	EFNA2	O43921	213 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	DIRAS1	O95057	198 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	PMS2P2	O95744	297 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	BPNT1	O95861	308 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	MT-ATP6	P00846	226 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	PF4	P02776	101 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	FCGR1A	P12314	374 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	FCGR2A	P12318	317 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	JUNB	P17275	347 aa	Predicted RBP	7.73	□□□□□ -1.17
USP4-213	ENST00000488520	IL11	P20809	199 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	FAS	P25445	335 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	LOX	P28300	417 aa	Predicted RBP	7.73	□□□□□ -1.17
USP4-213	ENST00000488520	UGT2B10	P36537	528 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	DIO1	P49895	249 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	SUCLG1	P53597	346 aa	Known RBP	7.73	□□□□□ -1.17
USP4-213	ENST00000488520	ATP5J2	P56134	94 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	CTBP2	P56545	445 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	ACTR3	P61158	418 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	VLDLR	P98155	873 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	PMS2P3	Q13401	168 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	GK3P	Q14409	553 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	KPNB1	Q14974	876 aa	Known RBP	7.73	□□□□□ -1.17
USP4-213	ENST00000488520	OR7A5	Q15622	319 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	EXOC3L2	Q2M3D2	409 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	FAM69A	Q5T7M9	428 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	OR2T5	Q6IEZ7	315 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	ZFP1	Q6P2D0	407 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	COMTD1	Q86VU5	262 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	NKAIN4	Q8IVV8	208 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	SLC43A2	Q8N370	569 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	FAM86B1	Q8N7N1	296 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	ZNF610	Q8N9Z0	462 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	OR2T29	Q8NH02	315 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	MFSD8	Q8NHS3	518 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	PIGX	Q8TBF5	258 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	ACOT11	Q8WXI4	607 aa	Predicted RBP	7.73	□□□□□ -1.17
USP4-213	ENST00000488520	SGTB	Q96EQ0	304 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	DNAJA3	Q96EY1	480 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	ZNF845	Q96IR2	970 aa	Predicted RBP	7.73	□□□□□ -1.17
USP4-213	ENST00000488520	RHOV	Q96L33	236 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	NPAS1	Q99742	590 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	KLHDC3	Q9BQ90	382 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	RSPO3	Q9BXY4	272 aa	Predicted RBP	7.73	□□□□□ -1.17
USP4-213	ENST00000488520	KRTAP9-2	Q9BYQ4	174 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	OR11A1	Q9GZK7	315 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	NDEL1	Q9GZM8	345 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	NANS	Q9NR45	359 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	ADAM30	Q9UKF2	790 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	TMEM5	Q9Y2B1	443 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	PLCE1	Q9P212	2302 aa		7.73	□□□□□ -1.17
USP4-213	ENST00000488520	DYSF	O75923	2080 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520		A0A1W2PRQ8	180 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520		H0YC42	278 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	CLOCK	O15516	846 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	DNPH1	O43598	174 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	OR10H3	O60404	316 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	FKBP6	O75344	327 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	CCNB2	O95067	398 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	VAMP5	O95183	116 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	BAG2	O95816	211 aa		7.72	□□□□□ -1.17

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms